Hi, I am trying to use the 'align and mutate’ feature in coot, in order to place the sequence of a subunit in a solved structure (the homologous subunit), and initially it looks like its working, but the numbering of the sequence seems off. Now the protein is 118 residues instead of 115. Does anyone know how to deal with this particular problem? My protein has ~8000 residues in total, and I prefer not to mutate (the ones that require mutating) individually.
Best wishes, Noor
