On 08/05/18 18:21, Noor Agip wrote: > > I am trying to use the 'align and mutate’ feature in coot, in order to > place the sequence of a subunit in a solved structure (the homologous > subunit), and initially it looks like its working, but the numbering > of the sequence seems off. Now the protein is 118 residues instead of > 115.
Oh dear, that does sound like a bug. Possibly not though, it is intended that the align and mutate feature will do deletions also. > Does anyone know how to deal with this particular problem? My protein > has ~8000 residues in total, and I prefer not to mutate (the ones that > require mutating) individually. > The scripting interface in coot is quite extensive so you can probably avoid a lot of clicking with a bit of scheme or python. Paul.
