Source:
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases/coot-0.9.1.tar.gz
Binaries (currently only Scientific Linux 7.6):
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/binaries/release/coot-0.9.1.Linux-x86_64-scientific-linux-7.6-gtk2-python.tar.gz
Paul.
Release 0.9.1
o FEATURE: fat atoms for some metals and halides
o FEATURE: add a "Rescale" entry and button for the density fit
validation graph
o FEATURE: add label_closest_atoms_in_neighbour_residues to the API
and added to the Draw menu
o FEATURE: missing-residue loops can now be undisplayed:
set_draw_missing_residues_loops()
o FEATURE: find pep-flips using based on difference map
o FEATURE: Add "Proportional editing" for atom-pull neighbour
displacement
[c.f. Tristan's ISOLDE]. Use Ctrl-scroll to change the radius
o FEATURE: carbon atoms in Colour-by-Chain mode have their own colour
index
o FEATURE: add a menu items for the addition of hydrogen atoms
o FEATURE: backup file names can now be decolonized
o FEATURE: flip_hand() function added - for reversing the hand of
Cryo-EM maps
o FEATURE: add "backward" for better core dump reporting
o FEATURE: "Delete Residue" added - bound to Ctrl-D
o FEATURE: add_nucleotide() added to the API [Gianluca Cascarano]
o FEATURE: Distances added to raster3d output [Vito Calderone]
o CHANGE: Waters can no longer be placed directly on top of another atom
o CHANGE: Sequence view is docked by default - now with
current-residue highlighting
o CHANGE: Bond orders used for colour-by-chain mode
o CHANGE: Increase weight on atom-pull restraint
o CHANGE: More sane rotation Ctrl-base rotation in
Rotation/Translation mode [Mattias Barone]
o CHANGE: contact dots now use Fibonacci spheres - goodbye UV pole
crowding
o CHANGE: improvements to dictionary reading and reporting of mismatches
o CHANGE: single-letter entry added to residue type selector for
mutations
o CHANGE: rework the linking algorithm so that residues with a
residue number gap but close
N and C atoms can now be linked.
o CHANGE: Fourier filtered Jiggle-Fit now followed by rigid-body
refinement at full
resolution
o CHANGE: assign_sequence_from_file() rewritten and generalize for
all-chain search [Bob Nolte]
o BUG-FIX: fix the generation of link metal oxygen atoms restraints
when the atom labels are reversed.
o BUG-FIX: fix crash in lbg network molecule retrieval
o BUG-FIX: Merging a ligand in merge-molecules no longer steps the
residue number by 100 when
adding the same ligand type [Keith Wilson]
o BUG-FIX: Curlew's "Install" and "Uninstall" buttons work better
o BUG-FIX: mutate_by_overlap now works for nucleotides
o BUG-FIX: backup file name generation cleaned up
o BUG-FIX: tidied up the GLY representation in CA+sidechains mode
o BUG-FIX: Apply the dynamic transformation to NCS ghost maps [Randy
Read]
o BUG-FIX: remove neighbour-generation memory leak
o BUG-FIX: getopt usage reworked - the command line should behave
better on some systems
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