Thanks Paul, Another question:
I am not able to change the color of atoms when it displays C-alpha atoms/backbone, always shown in brown color. Is there a command to change the C-atom color? (I have coot-0.9.1 EL ccp4 running) Thanks, Ibrahim ________________________________ From: Paul Emsley <[email protected]> Sent: Monday, November 16, 2020 1:09 PM To: Moustafa, Ibrahim M. <[email protected]>; [email protected] <[email protected]> Subject: Re: homology model in coot On 16/11/2020 16:26, Moustafa, Ibrahim M. wrote: > Hi all, > > I'd like to build a C-alpha model to fit a low-res cryoEM map based on a > homologous C-alpha model template. > I tried to use coot "use clustal for alignment then mutate", the alignment is > generated but when I try to > mutate listed residues of 'residue mismatches' I get an error message: > "Failure to get orientation matrix". > I guess it needs all-atom model to work! At least a mainchain model, I think. > I wonder if there is a way around in coot (or other tools) to create this > low resolution model using > C-alpha template. > Calculate -> Other Modelling Tools -> CA Zone to Mainchain Then Use ClustalW for alignment on the "Forwards" molecule. Paul. ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
