OK, I did some quick tests and can confirm that Coot reliably gives
back "0" for Ts. I guess that this related to a DNA(T) bug (see my
previous posts).
Is there a Coot version that does the job correctly?
Zitat von Clemens Grimm <[email protected]>:
Dear All,
I am doing:
coot> (mutate-residue-range 8 "N" 5 60
"AGCTTAAAAATTGAAAAACTATTTTTTTTTTTTTTAAATCCATAACCCACTTGGGG")
which gives me back:
(1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1)
As the result does not look as expected I am unsure
- whether a 0 in the result means error/nothing done/nothing to do ?
- whether "AGCTTA ..." has to be written as "dAdGdCdTdTdA ..."?
Regards,
Clemens
Zitat von Clemens Grimm <[email protected]>:
Dear All,
mutating RNA bases to Tr gives me the following error:
"This should never happen - badness in
get_standard_residue_instance, we selected 0 residues looking for
residues of type :Tr:
Oops - can't find standard residue for type Tr"
Other residue types work well.
There is a very old thread stating this (or a similar) error had
been fixed for DNA. Maybe it had not for RNA?
Clemens
--------------------------------------------------
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [email protected]
phone : +49 0931 31 84031
-------------------------------------------------
--------------------------------------------------
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [email protected]
phone : +49 0931 31 84031
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Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [email protected]
phone : +49 0931 31 84031
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