Thanks for your kind answer and sorry for ask two questions at once. As you said, I checked up the terminal when I started coot with 'OPEN in Coot' button in phenix and output is here
HTTPSCertificateForHost: /Applications/ccp4-7.1/coot.app/Contents/Resources/run.sh INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON: /Applications/ccp4-7.1/lib/data/monomers/ There are 244 data in /Applications/ccp4-7.1/lib/data/monomers/list/mon_lib_list.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ALA.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ASP.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ASN.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/CYS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLN.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLY.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLU.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PHE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/h/HIS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/i/ILE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/l/LYS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/l/LEU.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/m/MET.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/m/MSE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PRO.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ARG.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/s/SER.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/THR.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/v/VAL.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/TRP.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/TYR.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PO4.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/s/SO4.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GOL.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/CIT.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/e/EDO.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/A.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/C.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/G.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/u/U.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DA.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DC.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DG.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DT.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/h/HOH.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/n/NA.cif Spacegroup: P 1 (filter-fileselection-filenames-state) (get-active-map-drag-flag) (use-graphics-interface-state) INFO:: coot.py imported ** (coot-bin:51212): WARNING **: Trying to register gtype 'GMountMountFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:51212): WARNING **: Trying to register gtype 'GDriveStartFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:51212): WARNING **: Trying to register gtype 'GSocketMsgFlags' as enum when in fact it is of type 'GFlags' INFO:: coot_python initialized Running python script /Applications/ccp4-7.1/lib/python2.7/site-packages/coot/coot_load_modules.py Good Evening Bongheon, Welcome to Coot version 0.9.6 (set-display-intro-string "Good Evening Bongheon, Welcome to Coot version 0.9.6") Coot Python Scripting GUI code found and loaded. Coot Python Scripting GUI code found and loaded. (use-graphics-interface-state) Running python script /Users/bh/.coot-preferences/coot_preferences.py (set-filter-fileselection-filenames 0) (unset-sticky-sort-by-date) (set-colour-map-rotation-on-read-pdb 21.00) (set-colour-map-rotation-on-read-pdb-c-only-flag 1) (set-density-size 16.00) (set-swap-difference-map-colours 0) (set-colour-map-rotation-for-map 14.00) (set-active-map-drag-flag 1) (set-idle-function-rotate-angle 1.00) (filter-fileselection-filenames-state) (get-active-map-drag-flag) (use-graphics-interface-state) Coot Scheme Scripting GUI code found and loaded. Good evening BongHeon. Welcome to Coot 0.9.6. (set-display-intro-string "Good evening BongHeon. Welcome to Coot 0.9.6") (set-display-lists-for-maps 0) load /Users/bh/.coot-preferences/coot-preferences.scm (set-filter-fileselection-filenames 0) (unset-sticky-sort-by-date) (set-colour-map-rotation-on-read-pdb 21.00) (set-colour-map-rotation-on-read-pdb-c-only-flag 1) (set-density-size 16.00) (set-swap-difference-map-colours 0) (set-colour-map-rotation-for-map 14.00) (set-active-map-drag-flag 1) (set-idle-function-rotate-angle 1.00) (filter-fileselection-filenames-state) (get-active-map-drag-flag) (use-graphics-interface-state) I think ** (coot-bin:50867): WARNING **: Trying to register gtype 'GMountMountFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:50867): WARNING **: Trying to register gtype 'GDriveStartFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:50867): WARNING **: Trying to register gtype 'GSocketMsgFlags' as enum when in fact it is of type 'GFlags' Are these massages might be related with the problems? Coot just cannot open map or coordinate file from phenix or with drag & drop and there are no error massage in terminal. I tried run coot directly in terminal and there are no response to drag and drop also. terminal output is same with above. Or Did I checked wrong thing? Could you please give me an any ideas to solve it? Other function in coot works properly, I think, I can open the map or coordinate using file tab 'open coordinates...' or 'open map...' and other calculate was also work well Again, thank you for your help Sincerely, BongHeon Kim ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
