I checked my clipper. The version is below.
Package clipper-2.1-26.20140911.el7.x86_64 already installed and latest
version

Here is the version of clipper-devel.
Package clipper-devel-2.1-26.20140911.el7.x86_64 already installed and
latest version

Paul Emsley <pems...@mrc-lmb.cam.ac.uk> 于2022年4月7日周四 17:26写道:

>
> On 07/04/2022 23:22, C.J. wrote:
> > Hi all,
> >
> > Has anyone successfully built coot-1.0.02 on centos7+anaconda3 python
> > environment?
> > My OS environment is below.
> >
> > $ uname -a
> > Linux lab 3.10.0-1127.el7.x86_64 #1 SMP Tue Mar 31 23:36:51 UTC 2020
> > x86_64 x86_64 x86_64 GNU/Linux
> >
> > $ python --version
> > Python 3.7.6
> >
> > $ make --version
> > GNU Make 3.82
> > Built for x86_64-redhat-linux-gnu
> > Copyright (C) 2010  Free Software Foundation, Inc.
> > License GPLv3+: GNU GPL version 3 or later
> > <http://gnu.org/licenses/gpl.html>
> > This is free software: you are free to change and redistribute it.
> > There is NO WARRANTY, to the extent permitted by law.
> >
> > $ gcc --version
> > gcc (GCC) 8.3.1 20190311 (Red Hat 8.3.1-3)
> > Copyright (C) 2018 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions. There is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > I tried to build it with the script
> > (https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3).
> > But it failed with unknown reasons. The build.log says only "coot
> > build failed, exiting" in the last line without any other error
> > messags. See below for last 20 lines.
> >
> > numpy is found, skip
> > building rdkit 2020_09_3
> > building QED
> > libunistring skip_this true
> > not building libunistring
> > not building gc
> > not building gmp
> > BUILDING guile:
> > BUILDING g-wrap:
> > BUILDING guile-cairo
> > guile-lib needs to be installed
> > some test here
> > guile-config found
> > guile-gnome-platform skip_this false
> > 222222222222222 Now Coot.....
> > Thu Apr  7 14:41:36 PDT 2022
> > /data2/sw/coot-1.0.01
> > BUILDING coot
> > coot build failed, exiting.
> >
> >
> > Even I tried to build with ./configure and make. It came with an error
> > message as below.
> >
> > /bin/sh ../libtool  --tag=CXX   --mode=compile g++
> > -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\"
> > -DPACKAGE_VERSION=\"1.0.01\" -DPACKAGE_STRING=\"coot\ 1.0.01\"
> > -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\"
> > -DVERSION=\"1.0.01\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
> > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
> > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
> > -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1
> > -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1
> > -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.7\" -DHAVE_BOOST=/\*\*/
> > -DHAVE_BOOST_PYTHON=/\*\*/ -I.  -I.. -DHAVE_GSL -I/usr/include
> > -fopenmp -DPKGDATADIR='"/usr/local/share/coot"' -DUSE_SQLITE3
> >  -DUSE_LIBPNG=1 -I/usr/include/libpng15   -g -O2 -Wall -Wno-unused
> >  -std=c++11 -MT residue_by_phi_psi.lo -MD -MP -MF
> > .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo
> > residue_by_phi_psi.cc
> > libtool: compile:  g++ -DPACKAGE_NAME=\"coot\"
> > -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.0.01\"
> > "-DPACKAGE_STRING=\"coot 1.0.01\"" -DPACKAGE_BUGREPORT=\"\"
> > -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.0.01\"
> > -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
> > -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1
> > -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1
> > -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\"
> > -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1
> > -DHAVE_PYTHON=\"3.7\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_PYTHON=/**/"
> > -I. -I.. -DHAVE_GSL -I/usr/include -fopenmp
> > -DPKGDATADIR=\"/usr/local/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1
> > -I/usr/include/libpng15 -g -O2 -Wall -Wno-unused -std=c++11 -MT
> > residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c
> > residue_by_phi_psi.cc  -fPIC -DPIC -o .libs/residue_by_phi_psi.o
> > residue_by_phi_psi.cc: In member function ‘void
> > coot::residue_by_phi_psi::init_phi_psi_plot()’:
> > residue_by_phi_psi.cc:869:37: error: ‘All2’ is not a member of
> > ‘clipper::Ramachandran’
> >     rama.init(clipper::Ramachandran::All2);
> >                                      ^~~~
> > residue_by_phi_psi.cc:871:41: error: ‘Pro2’ is not a member of
> > ‘clipper::Ramachandran’
> >     rama_pro.init(clipper::Ramachandran::Pro2);
> >                                          ^~~~
>
>
> configure is somehow picking up the wrong/older clipper. Perhaps a
> pre-installed one?
>
>
> Paul.
>
>
>

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