I checked my clipper. The version is below. Package clipper-2.1-26.20140911.el7.x86_64 already installed and latest version
Here is the version of clipper-devel. Package clipper-devel-2.1-26.20140911.el7.x86_64 already installed and latest version Paul Emsley <pems...@mrc-lmb.cam.ac.uk> 于2022年4月7日周四 17:26写道： > > On 07/04/2022 23:22, C.J. wrote: > > Hi all, > > > > Has anyone successfully built coot-1.0.02 on centos7+anaconda3 python > > environment? > > My OS environment is below. > > > > $ uname -a > > Linux lab 3.10.0-1127.el7.x86_64 #1 SMP Tue Mar 31 23:36:51 UTC 2020 > > x86_64 x86_64 x86_64 GNU/Linux > > > > $ python --version > > Python 3.7.6 > > > > $ make --version > > GNU Make 3.82 > > Built for x86_64-redhat-linux-gnu > > Copyright (C) 2010 Free Software Foundation, Inc. > > License GPLv3+: GNU GPL version 3 or later > > <http://gnu.org/licenses/gpl.html> > > This is free software: you are free to change and redistribute it. > > There is NO WARRANTY, to the extent permitted by law. > > > > $ gcc --version > > gcc (GCC) 8.3.1 20190311 (Red Hat 8.3.1-3) > > Copyright (C) 2018 Free Software Foundation, Inc. > > This is free software; see the source for copying conditions. There is NO > > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > > PURPOSE. > > > > I tried to build it with the script > > (https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3). > > But it failed with unknown reasons. The build.log says only "coot > > build failed, exiting" in the last line without any other error > > messags. See below for last 20 lines. > > > > numpy is found, skip > > building rdkit 2020_09_3 > > building QED > > libunistring skip_this true > > not building libunistring > > not building gc > > not building gmp > > BUILDING guile: > > BUILDING g-wrap: > > BUILDING guile-cairo > > guile-lib needs to be installed > > some test here > > guile-config found > > guile-gnome-platform skip_this false > > 222222222222222 Now Coot..... > > Thu Apr 7 14:41:36 PDT 2022 > > /data2/sw/coot-1.0.01 > > BUILDING coot > > coot build failed, exiting. > > > > > > Even I tried to build with ./configure and make. It came with an error > > message as below. > > > > /bin/sh ../libtool --tag=CXX --mode=compile g++ > > -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" > > -DPACKAGE_VERSION=\"1.0.01\" -DPACKAGE_STRING=\"coot\ 1.0.01\" > > -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" > > -DVERSION=\"1.0.01\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 > > -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 > > -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 > > -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.7\" -DHAVE_BOOST=/\*\*/ > > -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include > > -fopenmp -DPKGDATADIR='"/usr/local/share/coot"' -DUSE_SQLITE3 > > -DUSE_LIBPNG=1 -I/usr/include/libpng15 -g -O2 -Wall -Wno-unused > > -std=c++11 -MT residue_by_phi_psi.lo -MD -MP -MF > > .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo > > residue_by_phi_psi.cc > > libtool: compile: g++ -DPACKAGE_NAME=\"coot\" > > -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.0.01\" > > "-DPACKAGE_STRING=\"coot 1.0.01\"" -DPACKAGE_BUGREPORT=\"\" > > -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.0.01\" > > -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 > > -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 > > -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 > > -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" > > -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 > > -DHAVE_PYTHON=\"3.7\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_PYTHON=/**/" > > -I. -I.. -DHAVE_GSL -I/usr/include -fopenmp > > -DPKGDATADIR=\"/usr/local/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 > > -I/usr/include/libpng15 -g -O2 -Wall -Wno-unused -std=c++11 -MT > > residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c > > residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o > > residue_by_phi_psi.cc: In member function ‘void > > coot::residue_by_phi_psi::init_phi_psi_plot()’: > > residue_by_phi_psi.cc:869:37: error: ‘All2’ is not a member of > > ‘clipper::Ramachandran’ > > rama.init(clipper::Ramachandran::All2); > > ^~~~ > > residue_by_phi_psi.cc:871:41: error: ‘Pro2’ is not a member of > > ‘clipper::Ramachandran’ > > rama_pro.init(clipper::Ramachandran::Pro2); > > ^~~~ > > > configure is somehow picking up the wrong/older clipper. Perhaps a > pre-installed one? > > > Paul. > > > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
