Hi Paul,

Thanks for the response. I essentially followed the method outlined in Rob's 
talk, using JLigand to generate the cif file rather than AceDrug. Coot does 
recognise the link (displaying it with a dotted line), but when I sphere refine 
the two linked residues, it essentially ignores the restraints from the cif 
file and tries to place the linked atoms non-bonding distance apart. 

Cheers,
Michelle

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