The assertion module cannot be run on its own, it depends on other annotations.
It's typically requires running in the clinical document pipeline that Pei mentioned. If you really want to run it by itself, you'll have to provide sentence, token (and it's subclasses), and entities (and their associated ontology concepts). Even in this case, you should still run AssertionMiniPipelineAnalysisEngine.xml (instead of assertionAnalysisEngine.xml). This calls conceptConverterAnysisEngine.xml before assertionAnalysisEngine.xml. Matt On 2012-11-14 15:18 , "Chen, Pei" <[email protected]> wrote: >Hi Deepal, >I presume you are using v2.5. >Did you know that the DefaultAggregatePipeline.xml from the cdp(clinical >documents pipeline) folder should already have the negation/assertion >module included for the identified annotations? > >Re:log in the CVD. There should be a menu option in the UIMA CVD view>log >file. >I hope that helps. > >Sent from my iPhone > >On Nov 14, 2012, at 9:09 PM, "Deepal Dhariwal" <[email protected]> >wrote: > >> ---------- Forwarded message ---------- >> From: Deepal Dhariwal <[email protected]> >> Date: Wed, Nov 14, 2012 at 8:37 AM >> Subject: Regarding Assertion Tagger >> To: [email protected] >> >> >> Hello >> I want to assert presence of medical terms using cTAKESdesc \ >>assertiondesc >> \ AssertionAnalysisEngine. However when I load and execute this analysis >> engine using cTakes CVD I am getting the following exception. >> org.apache.uima.analysis_engine.AnalysisEngineProcessException: >>Anootator >> processing failed. More detailed information is in the log file. >> >> Kindly let me know the cause of exception and the location where log >>files >> are generated. >> >> Thanks >> Deepal Dhariwal
