See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/1178/>
------------------------------------------ [...truncated 103 lines...] [INFO] Unable to find resource 'colt:colt:jar:1.2.0' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//colt/colt/1.2.0/colt-1.2.0.jar [INFO] Unable to find resource 'concurrent:concurrent:jar:1.3.4' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//concurrent/concurrent/1.3.4/concurrent-1.3.4.jar [INFO] Unable to find resource 'colt:colt:jar:1.2.0' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release//colt/colt/1.2.0/colt-1.2.0.jar [INFO] Unable to find resource 'concurrent:concurrent:jar:1.3.4' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release//concurrent/concurrent/1.3.4/concurrent-1.3.4.jar [INFO] Unable to find resource 'colt:colt:jar:1.2.0' in repository l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//colt/colt/1.2.0/colt-1.2.0.jar [INFO] Unable to find resource 'concurrent:concurrent:jar:1.3.4' in repository l2fprod-release (http://cytoscape.wodaklab.org/nexus/content/repositories/l2fprod-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//concurrent/concurrent/1.3.4/concurrent-1.3.4.jar [INFO] Unable to find resource 'colt:colt:jar:1.2.0' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] Unable to find resource 'concurrent:concurrent:jar:1.3.4' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/colt/colt/1.2.0/colt-1.2.0.jar Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/concurrent/concurrent/1.3.4/concurrent-1.3.4.jar 184K downloaded (concurrent-1.3.4.jar) 568K downloaded (colt-1.2.0.jar) [INFO] [pax:compile] [INFO] Compiling 23 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] No sources to compile [INFO] [surefire:test] [INFO] No tests to run. [HUDSON] Recording test results [INFO] [bundle:bundle] [INFO] [javadoc:jar {execution: attach-javadocs}] [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package csplugins.layout.algorithms.circularLayout... Loading source files for package csplugins.layout.algorithms.bioLayout... Loading source files for package csplugins.layout.algorithms.graphPartition... Loading source files for package csplugins.layout.algorithms.hierarchicalLayout... Loading source files for package csplugins.layout.algorithms... Loading source files for package csplugins.layout... Constructing Javadoc information... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//CircularLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//CircularLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutFRAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutFRAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutKKAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutKKAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//AttributeCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//AttributeCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//DegreeSortedCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//DegreeSortedCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayoutTask.ISOMVertexData.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//Layout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//Edge.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//Graph.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//HierarchicalLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//HierarchicalLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//GroupAttributesLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//GroupAttributesLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//StackedNodeLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//StackedNodeLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//Profile.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//class-use/CircularLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//class-use/CircularLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutKKAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutFRAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutFRAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutKKAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/AttributeCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayoutTask.ISOMVertexData.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/AttributeCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/Layout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/DegreeSortedCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/DegreeSortedCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/Graph.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/HierarchicalLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/HierarchicalLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/Edge.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/StackedNodeLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/GroupAttributesLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/GroupAttributesLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/StackedNodeLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//class-use/Profile.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/stylesheet.css...> 20 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java>:136: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java>:197: warning - @param argument "flag" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:215: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:236: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:257: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask.java>:88: warning - @param argument "supportEdgeWeights" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java>:146: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayoutTask.java>:290: warning - @param argument "nodeIndex" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:195: warning - Tag @link: reference not found: csplugins.hierarchicallayout.Edge [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:660: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:1796: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:2313: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:85: warning - Tag @link: reference not found: csplugins.hierarchicallayout.Graph [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithmTask.java>:976: warning - @param argument "taskMonitor" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "x_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "y_start_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "nodes" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "nodes" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "x_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "y_start_position" is not a parameter name. [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101114.012202-1076.jar 95K uploaded (layout-cytoscape-impl-1.0-20101114.012202-1076.jar) [INFO] Uploading project information for layout-cytoscape-impl 1.0-20101114.012202-1076 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:layout-cytoscape-impl' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:layout-cytoscape-impl:1.0-SNAPSHOT' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101114.012202-1076-javadoc.jar 186K uploaded (layout-cytoscape-impl-1.0-20101114.012202-1076-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101114.012202-1076-sources.jar 79K uploaded (layout-cytoscape-impl-1.0-20101114.012202-1076-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-13_20-21-22/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-13_20-21-22/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101114.012202-1076/layout-cytoscape-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-13_20-21-22/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101114.012202-1076/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-13_20-21-22/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101114.012202-1076/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 40 seconds [INFO] Finished at: Sat Nov 13 20:22:05 EST 2010 [INFO] Final Memory: 64M/725M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 515 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 30 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 978 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 239 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 13 ms [INFO] Squid extraction done: 657 ms [INFO] Sensor SquidSensor done: 1954 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 7 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 42 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 174 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9 seconds [INFO] Finished at: Sat Nov 13 20:22:25 EST 2010 [INFO] Final Memory: 50M/489M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
