See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/1179/>
------------------------------------------ [...truncated 42 lines...] A pom.xml U . At revision 22841 no change for http://chianti.ucsd.edu/svn/core3/layout-cytoscape-impl/trunk since the previous build Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 59958 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:presentation-api:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] [pax:compile] [INFO] Compiling 23 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] No sources to compile [INFO] [surefire:test] [INFO] No tests to run. [HUDSON] Recording test results [INFO] [bundle:bundle] [INFO] [javadoc:jar {execution: attach-javadocs}] [ERROR] Error fetching link: http://java.sun.com/javase/6/docs/api/package-list. Ignored it. [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package csplugins.layout.algorithms.circularLayout... Loading source files for package csplugins.layout.algorithms.bioLayout... Loading source files for package csplugins.layout.algorithms.graphPartition... Loading source files for package csplugins.layout.algorithms.hierarchicalLayout... Loading source files for package csplugins.layout.algorithms... Loading source files for package csplugins.layout... Constructing Javadoc information... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//CircularLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//CircularLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutFRAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutFRAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutKKAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//BioLayoutKKAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//AttributeCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//AttributeCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//DegreeSortedCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//DegreeSortedCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//ISOMLayoutTask.ISOMVertexData.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//Layout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//Edge.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//Graph.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//HierarchicalLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//HierarchicalLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//GroupAttributesLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//GroupAttributesLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//StackedNodeLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//StackedNodeLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//Profile.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//class-use/CircularLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//class-use/CircularLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutKKAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutFRAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutFRAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutKKAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//class-use/BioLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/AttributeCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayoutTask.ISOMVertexData.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/AttributeCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/Layout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/ISOMLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/DegreeSortedCircleLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//class-use/DegreeSortedCircleLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/Graph.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/HierarchicalLayoutAlgorithmTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/HierarchicalLayoutAlgorithm.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//class-use/Edge.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/StackedNodeLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/GroupAttributesLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/GroupAttributesLayoutTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//class-use/StackedNodeLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//class-use/Profile.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/bioLayout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/circularLayout//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/graphPartition//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/csplugins/layout/algorithms/hierarchicalLayout//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/apidocs/stylesheet.css...> 20 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java>:136: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java>:197: warning - @param argument "flag" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:215: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:236: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:257: warning - @param argument "value" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask.java>:88: warning - @param argument "supportEdgeWeights" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java>:146: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayoutTask.java>:290: warning - @param argument "nodeIndex" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:195: warning - Tag @link: reference not found: csplugins.hierarchicallayout.Edge [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:660: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:1796: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java>:2313: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java>:85: warning - Tag @link: reference not found: csplugins.hierarchicallayout.Graph [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithmTask.java>:976: warning - @param argument "taskMonitor" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "x_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "y_start_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83: warning - @param argument "nodes" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "nodes" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "x_position" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71: warning - @param argument "y_start_position" is not a parameter name. [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101115.011200-1077.jar 95K uploaded (layout-cytoscape-impl-1.0-20101115.011200-1077.jar) [INFO] Uploading project information for layout-cytoscape-impl 1.0-20101115.011200-1077 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:layout-cytoscape-impl' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:layout-cytoscape-impl:1.0-SNAPSHOT' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101115.011200-1077-javadoc.jar 182K uploaded (layout-cytoscape-impl-1.0-20101115.011200-1077-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-20101115.011200-1077-sources.jar 79K uploaded (layout-cytoscape-impl-1.0-20101115.011200-1077-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-14_20-11-14/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-14_20-11-14/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101115.011200-1077/layout-cytoscape-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-14_20-11-14/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101115.011200-1077/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-14_20-11-14/archive/org.cytoscape/layout-cytoscape-impl/1.0-20101115.011200-1077/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 46 seconds [INFO] Finished at: Sun Nov 14 20:12:03 EST 2010 [INFO] Final Memory: 61M/725M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 473 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 26 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 903 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 279 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 13 ms [INFO] Squid extraction done: 661 ms [INFO] Sensor SquidSensor done: 1940 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 8 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 41 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 199 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9 seconds [INFO] Finished at: Sun Nov 14 20:12:13 EST 2010 [INFO] Final Memory: 51M/600M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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