See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/1176/>

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20 warnings
[WARNING] Javadoc Warnings
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java>:136:
 warning - @returns is an unknown tag.
[WARNING] 
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 warning - @param argument "flag" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:215:
 warning - @param argument "value" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:236:
 warning - @param argument "value" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java>:257:
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[WARNING] 
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[WARNING] 
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[WARNING] 
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[WARNING] 
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[WARNING] 
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[WARNING] 
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 warning - Tag @link: reference not found: csplugins.hierarchicallayout.Graph
[WARNING] 
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[WARNING] 
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[WARNING] 
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[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:83:
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[WARNING] 
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[WARNING] 
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[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java>:71:
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[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar>
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[Fatal Error] repository.xml:3:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
        at 
com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249)
        at 
com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284)
        at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208)
        at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347)
        at 
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324)
        at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140)
        at 
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
        at 
hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
        at 
org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
        at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
        at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
        at hudson.maven.agent.Main.launch(Main.java:165)
        at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:708)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:652)
        at hudson.remoting.UserRequest.perform(UserRequest.java:114)
        at hudson.remoting.UserRequest.perform(UserRequest.java:48)
        at hudson.remoting.Request$2.run(Request.java:270)
        at 
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
        at java.util.concurrent.FutureTask.run(FutureTask.java:138)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
        at java.lang.Thread.run(Thread.java:619)
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> 
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout 
impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-10_21-25-52/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout 
impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-10_21-25-52/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout 
impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-10_21-25-52/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout 
impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2010-11-10_21-25-52/archive/org.cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/layout-cytoscape-impl-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error retrieving previous build number for artifact 
'org.cytoscape:layout-cytoscape-impl:bundle': repository metadata for: 
'snapshot org.cytoscape:layout-cytoscape-impl:1.0-SNAPSHOT' could not be 
retrieved from repository: snapshots due to an error: GET request of: 
org/cytoscape/layout-cytoscape-impl/1.0-SNAPSHOT/maven-metadata.xml from 
snapshots failed

No space left on device
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 42 seconds
[INFO] Finished at: Wed Nov 10 21:26:37 EST 2010
[INFO] Final Memory: 61M/724M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout]
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.2
[INFO] [sonar-core:internal]
[INFO]  Database dialect class org.sonar.api.database.dialect.MySql
[INFO]  -------------  Analyzing org.cytoscape.layout-cytoscape-impl 
[csplugins.layout]
[INFO]  Selected quality profile : Cytoscape, language=java
[INFO]  Configure maven plugins...
[INFO]  Sensor JavaSourceImporter...
[INFO]  Sensor JavaSourceImporter done: 527 ms
[INFO]  Sensor AsynchronousMeasuresSensor...
[INFO]  Sensor AsynchronousMeasuresSensor done: 31 ms
[INFO]  Sensor SquidSensor...
[INFO]  Java AST scan...
[INFO]  Java AST scan done: 1017 ms
[INFO]  Java bytecode scan...
[INFO]  Java bytecode scan done: 249 ms
[INFO]  Squid extraction...
[INFO]  Package design analysis...
[INFO]  Package design analysis done: 17 ms
[INFO]  Squid extraction done: 869 ms
[INFO]  Sensor SquidSensor done: 2218 ms
[INFO]  Sensor ProfileSensor...
[INFO]  Sensor ProfileSensor done: 25 ms
[INFO]  Sensor ProjectLinksSensor...
[INFO]  Sensor ProjectLinksSensor done: 7 ms
[INFO]  Sensor VersionEventsSensor...
[INFO]  Sensor VersionEventsSensor done: 42 ms
[INFO]  Sensor Maven dependencies...
[INFO]  Sensor Maven dependencies done: 158 ms
[INFO]  Execute maven plugin findbugs-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout]
[INFO]    task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing findbugs:findbugs
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [findbugs:findbugs]
[INFO] Locale is en
     [java] Warnings generated: 82
[INFO]  Execute maven plugin findbugs-maven-plugin done: 19572 ms
[INFO]  Sensor FindbugsSensor...
[INFO]  Sensor FindbugsSensor done: 326 ms
[INFO]  Sensor CheckstyleSensor...
[INFO]  Execute Checkstyle 5.1...
[INFO]  Checkstyle output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/sonar/checkstyle-result.xml>
[INFO]  Checkstyle configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/sonar/checkstyle.xml>
[INFO]  Execute Checkstyle 5.1 done: 1418 ms
[INFO]  Sensor CheckstyleSensor done: 2191 ms
[INFO]  Sensor PmdSensor...
[INFO]  Execute PMD 4.2.5...
[INFO]  Java version: 1.6
[INFO]  PMD configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/sonar/pmd.xml>
[INFO]  PMD output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/sonar/pmd-result.xml>
[INFO]  Execute PMD 4.2.5 done: 7528 ms
[INFO]  Sensor PmdSensor done: 7828 ms
[INFO]  Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout]
[INFO]    task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 34 files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/generated-classes/cobertura>
[cobertura] WARN  [main] net.sourceforge.cobertura.instrument.ClassInstrumenter 
- No line number information found for class 
csplugins.layout.algorithms.graphPartition.AttributeCircleLayoutTask$1.  
Perhaps you need to compile with debug=true?
Cobertura: Saved information on 34 classes.
Instrument time: 1548ms

[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] No sources to compile
[INFO] [surefire:test]
[INFO] No tests to run.
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.2 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 34 classes.
Report time: 1508ms

[INFO] Cobertura Report generation was successful.
[INFO]  Execute maven plugin cobertura-maven-plugin done: 5112 ms
[INFO]  Sensor CoberturaSensor...
[INFO]  parsing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/site/cobertura/coverage.xml>
[INFO]  Sensor CoberturaSensor done: 350 ms
[INFO]  Sensor CpdSensor...
[INFO]  Sensor CpdSensor done: 316 ms
[INFO]  Execute maven plugin taglist-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout]
[INFO]    task-segment: [org.codehaus.mojo:taglist-maven-plugin:2.4:taglist]
[INFO] ------------------------------------------------------------------------
[WARNING] DEPRECATED [tags]: No reason given
[INFO] [taglist:taglist]
[WARNING] Using legacy tag format.  This is not recommended.
[INFO]  Execute maven plugin taglist-maven-plugin done: 3771 ms
[INFO]  Sensor org.sonar.plugins.taglist.taglistsen...@39d56e9...
[INFO]  Sensor org.sonar.plugins.taglist.taglistsen...@39d56e9 done: 80 ms
[INFO]  Sensor SurefireSensor...
[INFO]  parsing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/surefire-reports>
[INFO]  Sensor SurefireSensor done: 25 ms
[INFO]  Execute decorators...
[INFO]  ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar/
[INFO]  Database optimization...
[INFO]  Database optimization done: 2420 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56 seconds
[INFO] Finished at: Wed Nov 10 21:27:40 EST 2010
[INFO] Final Memory: 83M/770M
[INFO] ------------------------------------------------------------------------

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