See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/22/changes>
Changes: [mes] reflecting minor api changes ------------------------------------------ [...truncated 408 lines...] AU src/main/resources/cytoscape/help/images/ucsf-logo.gif AU src/main/resources/cytoscape/help/images/prefs_editor.png AU src/main/resources/cytoscape/help/images/attribute_browser1.png AU src/main/resources/cytoscape/help/images/VizmapBypass.png AU src/main/resources/cytoscape/help/images/small.distribute_horizontal_right.png AU src/main/resources/cytoscape/help/images/H_ALIGN_LEFT.gif AU src/main/resources/cytoscape/help/images/FilterPopupMenu.PNG AU src/main/resources/cytoscape/help/images/small.stack_vertical_right.png AU src/main/resources/cytoscape/help/images/InitialDefaultEditor.png AU src/main/resources/cytoscape/help/images/H_DIST_LEFT.gif AU src/main/resources/cytoscape/help/images/ontology_dag1.png AU src/main/resources/cytoscape/help/images/menu_layout_25.png AU src/main/resources/cytoscape/help/images/VizMapOptionIcon.png AU src/main/resources/cytoscape/help/images/menu_file_25.png AU src/main/resources/cytoscape/help/images/filterInit.png AU src/main/resources/cytoscape/help/images/small.stack_vertical_begin.png AU src/main/resources/cytoscape/help/images/image049.jpg AU src/main/resources/cytoscape/help/images/DefaultEditorPanel.png AU src/main/resources/cytoscape/help/images/V_STACK_CENTER.gif AU src/main/resources/cytoscape/help/images/VizMapperSample1Style.png AU src/main/resources/cytoscape/help/images/VizMapperExpRedBlack.png AU src/main/resources/cytoscape/help/images/edge_handles2.png AU src/main/resources/cytoscape/help/images/SeriesExample1.png AU src/main/resources/cytoscape/help/images/small.stack_horizontal_begin.png AU src/main/resources/cytoscape/help/images/attributes_gene_expr_icon.png A src/main/resources/cytoscape/help/jhelpidx.xml A src/main/resources/cytoscape/help/jhelptoc.xml A src/main/resources/cytoscape/help/index.html A src/main/resources/cytoscape/help/jhelpmap.jhm A pom.xml U . At revision 22841 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 34704 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 343 resources [INFO] [pax:compile] [INFO] Compiling 63 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing Application Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-14_20-24-25/archive/org.cytoscape/swing-application-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/util/OpenBrowserImpl.java>:[72,51] cannot find symbol symbol : variable DEF_WEB_BROWSER_PROP_NAME location: interface org.cytoscape.application.swing.util.OpenBrowser [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Sun Nov 14 20:24:35 EST 2010 [INFO] Final Memory: 49M/491M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing Cytoscape Swing Application Impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 505 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 30 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 746 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/internal/actions/CytoPanelAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/UndoAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$EditBookmarkDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$AlgorithmActionListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/RedoAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/DeleteEdit' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListModel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$MyItemRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/SettingsAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpAboutTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/SessionShutdownHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/AboutDialogFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/AbstractNetworkNameListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/ArrangeTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/ExitAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/AboutDialogImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/ShutdownHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectEdgeViewUpdater' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog$OkButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkViewCollectionTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/util/OpenBrowserImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectNodeViewUpdater' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkViewTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/CyVersion' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog$CancelButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContentsTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$PopupListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$TreeCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CytoscapeMenuPopulator' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/PrintAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/BookmarkAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContentsTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeTableModel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectRegisterListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$ExecuteButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/DeleteAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkCollectionTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/CytoPanelAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/UndoAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$EditBookmarkDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$AlgorithmActionListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/RedoAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/DeleteEdit' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListModel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$MyItemRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/SettingsAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpAboutTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/SessionShutdownHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/AboutDialogFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/AbstractNetworkNameListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/ArrangeTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/ExitAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/AboutDialogImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/ShutdownHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectEdgeViewUpdater' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog$OkButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkViewCollectionTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/util/OpenBrowserImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectNodeViewUpdater' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkViewTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/CyVersion' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog$CancelButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContentsTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$PopupListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$TreeCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkTaskFactoryTunableAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/CytoscapeMenuPopulator' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/PrintAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkViewManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/BookmarkAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/help/HelpContentsTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeTableModel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/select/SelectRegisterListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$ExecuteButtonListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/layout/ui/LayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/NetworkPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/actions/DeleteAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/internal/task/NetworkCollectionTaskFactoryTunableAction' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 1045 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 14 ms [INFO] Squid extraction done: 911 ms [INFO] Sensor SquidSensor done: 2782 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 24 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 36 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 183 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 10 seconds [INFO] Finished at: Sun Nov 14 20:24:56 EST 2010 [INFO] Final Memory: 54M/600M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
