See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/24/changes>
Changes: [mes] fixed package naming problems [mes] more clean up of package names ------------------------------------------ [...truncated 324 lines...] AU src/main/resources/cytoscape/help/images/small.align_vertical_bottom.png AU src/main/resources/cytoscape/help/images/attribute_table_import_primary_key.png AU src/main/resources/cytoscape/help/images/H_STACK_TOP.gif AU src/main/resources/cytoscape/help/images/H_ALIGN_RIGHT.gif AU src/main/resources/cytoscape/help/images/H_ALIGN_CENTER.gif AU src/main/resources/cytoscape/help/images/Rainbow1.png AU src/main/resources/cytoscape/help/images/V_ALIGN_TOP.gif AU src/main/resources/cytoscape/help/images/edge_handles1.png AU src/main/resources/cytoscape/help/images/network_overview_25.png AU src/main/resources/cytoscape/help/images/cytopanel-menu-items_25.png AU src/main/resources/cytoscape/help/images/GradientEditorSample1.png AU src/main/resources/cytoscape/help/images/ontology_net_table.png AU src/main/resources/cytoscape/help/images/network_import_dialog1_25.png AU src/main/resources/cytoscape/help/images/cyto-logo-smaller.gif AU src/main/resources/cytoscape/help/images/small.align_vertical_center.png AU src/main/resources/cytoscape/help/images/LabelWidthAndHeight.png AU src/main/resources/cytoscape/help/images/LowLOD.png AU src/main/resources/cytoscape/help/images/Tut1GalFiltered.png AU src/main/resources/cytoscape/help/images/small.distribute_vertical_top.png AU src/main/resources/cytoscape/help/images/EdgeMapping1.png AU src/main/resources/cytoscape/help/images/agilent-logo.gif AU src/main/resources/cytoscape/help/images/scale_networkB.png AU src/main/resources/cytoscape/help/images/EdgeMapping3.png AU src/main/resources/cytoscape/help/images/EmptyVisualStyle.png AU src/main/resources/cytoscape/help/images/cytopanel-float-dock-icon.png AU src/main/resources/cytoscape/help/images/LowLODZoom.png AU src/main/resources/cytoscape/help/images/small.align_begin.png AU src/main/resources/cytoscape/help/images/small.stack_vertical_center.png AU src/main/resources/cytoscape/help/images/cytoscape_network_hierarchy_25.png AU src/main/resources/cytoscape/help/images/cytopanel-float_25.png AU src/main/resources/cytoscape/help/images/small.align_horizontal_right.png AU src/main/resources/cytoscape/help/images/attribute_table_import_main.png AU src/main/resources/cytoscape/help/images/rotate_networkA.png AU src/main/resources/cytoscape/help/images/small.distribute_horizontal_left.png AU src/main/resources/cytoscape/help/images/small.stack_horizontal_bottom.png AU src/main/resources/cytoscape/help/images/ucsd-logo.gif AU src/main/resources/cytoscape/help/images/ontology_obo_table.png AU src/main/resources/cytoscape/help/images/TriangleDefaultEditor.png AU src/main/resources/cytoscape/help/images/menu_help_25.png AU src/main/resources/cytoscape/help/images/ontology_mapping_result.png AU src/main/resources/cytoscape/help/images/boolean_filter.png AU src/main/resources/cytoscape/help/images/small.stack_horizontal_center.png AU src/main/resources/cytoscape/help/images/H_DIST_RIGHT.gif AU src/main/resources/cytoscape/help/images/FilterAdvancedPanel.PNG AU src/main/resources/cytoscape/help/images/V_DIST_TOP.gif AU src/main/resources/cytoscape/help/images/isb-logo.gif AU src/main/resources/cytoscape/help/images/filter_icon.png AU src/main/resources/cytoscape/help/images/ontology_import_annotation.png AU src/main/resources/cytoscape/help/images/small.distribute_horizontal_center.png AU src/main/resources/cytoscape/help/images/small.distribute_begin_horizontal.png AU src/main/resources/cytoscape/help/images/small_manager.png AU src/main/resources/cytoscape/help/images/VizMapperDefaultStyle.png AU src/main/resources/cytoscape/help/images/scale_dialog.png AU src/main/resources/cytoscape/help/images/align_distribute_dialog.png AU src/main/resources/cytoscape/help/images/CellEditor1.png AU src/main/resources/cytoscape/help/images/menu_select_edges.png AU src/main/resources/cytoscape/help/images/importdialog1.png AU src/main/resources/cytoscape/help/images/attribute_browser_25.png AU src/main/resources/cytoscape/help/images/ontology_import_custom1.png AU src/main/resources/cytoscape/help/images/small.stack_vertical_left.png AU src/main/resources/cytoscape/help/images/NodeShapeMapping.png AU src/main/resources/cytoscape/help/images/numerical_filter.png AU src/main/resources/cytoscape/help/images/small.align_horizontal_left.png AU src/main/resources/cytoscape/help/images/VizMapperPopupMenu.png AU src/main/resources/cytoscape/help/images/ontology_ga_table.png AU src/main/resources/cytoscape/help/images/ontology_tree.png AU src/main/resources/cytoscape/help/images/H_DIST_CENTER.gif AU src/main/resources/cytoscape/help/images/ColorGradient.png AU src/main/resources/cytoscape/help/images/V_DIST_BOTTOM.gif AU src/main/resources/cytoscape/help/images/quick_find2.png AU 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src/main/resources/cytoscape/help/images/small.distribute_horizontal_right.png AU src/main/resources/cytoscape/help/images/H_ALIGN_LEFT.gif AU src/main/resources/cytoscape/help/images/FilterPopupMenu.PNG AU src/main/resources/cytoscape/help/images/small.stack_vertical_right.png AU src/main/resources/cytoscape/help/images/InitialDefaultEditor.png AU src/main/resources/cytoscape/help/images/H_DIST_LEFT.gif AU src/main/resources/cytoscape/help/images/ontology_dag1.png AU src/main/resources/cytoscape/help/images/menu_layout_25.png AU src/main/resources/cytoscape/help/images/VizMapOptionIcon.png AU src/main/resources/cytoscape/help/images/menu_file_25.png AU src/main/resources/cytoscape/help/images/filterInit.png AU src/main/resources/cytoscape/help/images/small.stack_vertical_begin.png AU src/main/resources/cytoscape/help/images/image049.jpg AU src/main/resources/cytoscape/help/images/DefaultEditorPanel.png AU src/main/resources/cytoscape/help/images/V_STACK_CENTER.gif AU src/main/resources/cytoscape/help/images/VizMapperSample1Style.png AU src/main/resources/cytoscape/help/images/VizMapperExpRedBlack.png AU src/main/resources/cytoscape/help/images/edge_handles2.png AU src/main/resources/cytoscape/help/images/SeriesExample1.png AU src/main/resources/cytoscape/help/images/small.stack_horizontal_begin.png AU src/main/resources/cytoscape/help/images/attributes_gene_expr_icon.png A src/main/resources/cytoscape/help/jhelpidx.xml A src/main/resources/cytoscape/help/jhelptoc.xml A src/main/resources/cytoscape/help/index.html A src/main/resources/cytoscape/help/jhelpmap.jhm A pom.xml U . At revision 22850 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 54957 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 343 resources [INFO] [pax:compile] [INFO] Compiling 62 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing Application Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-15_15-02-21/archive/org.cytoscape/swing-application-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTask.java>:[33,31] cannot find symbol symbol : class OpenBrowser location: package org.cytoscape.util.swing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTask.java>:[40,9] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.view.help.HelpContactHelpDeskTask <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTask.java>:[42,32] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.view.help.HelpContactHelpDeskTask <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogImpl.java>:[49,31] cannot find symbol symbol : class OpenBrowser location: package org.cytoscape.util.swing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogImpl.java>:[61,9] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.dialogs.AboutDialogImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogImpl.java>:[102,54] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.dialogs.AboutDialogImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory.java>:[33,31] cannot find symbol symbol : class OpenBrowser location: package org.cytoscape.util.swing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory.java>:[40,9] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.view.help.HelpContactHelpDeskTaskFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory.java>:[42,39] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.view.help.HelpContactHelpDeskTaskFactory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogFactoryImpl.java>:[40,31] cannot find symbol symbol : class OpenBrowser location: package org.cytoscape.util.swing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogFactoryImpl.java>:[46,9] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.dialogs.AboutDialogFactoryImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/dialogs/AboutDialogFactoryImpl.java>:[48,31] cannot find symbol symbol : class OpenBrowser location: class org.cytoscape.internal.dialogs.AboutDialogFactoryImpl [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Mon Nov 15 15:02:30 EST 2010 [INFO] Final Memory: 46M/488M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing Cytoscape Swing Application Impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 610 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 26 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 796 ms [INFO] Squid extraction... [INFO] Squid extraction done: 652 ms [INFO] Sensor SquidSensor done: 1526 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 35 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 224 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9 seconds [INFO] Finished at: Mon Nov 15 15:02:51 EST 2010 [INFO] Final Memory: 49M/600M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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