See 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/25/changes>

Changes:

[kono] Fixed errors in config files.

------------------------------------------
[...truncated 526 lines...]
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//CytoscapeMenus.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//CytoscapeToolBar.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//NetworkPanel.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//NetworkPanel.NetworkTreeNode.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//NetworkViewManager.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//ToolCytoPanelListener.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//DynamicLayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//DynamicLayoutMenu.LayoutAttributeMenuItem.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//LayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//LayoutMenuManager.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//LayoutSettingsDialog.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//LayoutTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//SettingsAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//StaticLayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//UndoMonitor.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//CyOperatingContextImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//CyVersion.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//SessionShutdownHandler.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//ShutdownHandler.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/overview-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//package-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//package-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//package-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/constant-values.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/serialized-form.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//class-use/SelectRegisterListener.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//class-use/SelectEdgeViewUpdater.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//class-use/SelectNodeViewUpdater.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/RedoAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/BookmarkAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/ExitAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/PrintAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/CytoPanelAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/DeleteAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/UndoAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//class-use/PreferenceAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/PreferenceValueDialog.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/AboutDialogFactoryImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/BookmarkDialogImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/BookmarkDialogImpl.EditBookmarkDialog.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/BookmarkDialogFactoryImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/PreferenceTableModel.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/PreferencesDialogImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//class-use/PreferencesDialogFactoryImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/NetworkTaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/CytoPanelTaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/NetworkCollectionTaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/NetworkViewTaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/NetworkViewCollectionTaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//class-use/TaskFactoryTunableAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpAboutTaskFactory.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/ArrangeTaskFactory.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpContentsTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpContentsTaskFactory.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpContactHelpDeskTaskFactory.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpAboutTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/ArrangeTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//class-use/HelpContactHelpDeskTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/NetworkViewManager.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/NetworkPanel.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/NetworkPanel.NetworkTreeNode.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoscapeMenuPopulator.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CyDesktopManager.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CyDesktopManager.Arrange.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/AbstractNetworkNameListener.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoPanelUtil.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/ToolCytoPanelListener.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoscapeToolBar.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoscapeMenuBar.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoPanelContainer.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/BiModalJSplitPane.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoPanelImp.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoscapeMenus.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CytoscapeDesktop.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/CyHelpBrokerImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//class-use/BirdsEyeViewHandler.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/SettingsAction.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/LayoutTask.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/LayoutSettingsDialog.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/StaticLayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/LayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/LayoutMenuManager.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/DynamicLayoutMenu.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//class-use/DynamicLayoutMenu.LayoutAttributeMenuItem.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//class-use/UndoMonitor.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//class-use/CyVersion.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//class-use/SessionShutdownHandler.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//class-use/ShutdownHandler.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//class-use/CyOperatingContextImpl.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/actions//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/dialogs//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/layout/ui//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/select//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/task//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/util/undo//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view//package-use.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/org/cytoscape/internal/view/help//package-use.html...>
Building index for all the packages and classes...
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/overview-tree.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/index-all.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/deprecated-list.html...>
Building index for all classes...
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/index.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/overview-summary.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/help-doc.html...>
Generating 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/apidocs/stylesheet.css...>
12 warnings
[WARNING] Javadoc Warnings
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/BirdsEyeViewHandler.java>:96:
 warning - @param argument "desktopPane" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java>:322:
 warning - @beaninfo is an unknown tag.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java>:62:
 warning - Tag @link: can't find initializeCytoscapeToolBar() in 
org.cytoscape.internal.view.CytoscapeToolBar
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java>:283:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java>:135:
 warning - @param argument "desktop" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/NetworkViewManager.java>:123:
 warning - @param argument "desktop" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/CyVersion.java>:79:
 warning - @inheritdoc is an unknown tag -- same as a known tag except for case.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/CyVersion.java>:86:
 warning - @inheritdoc is an unknown tag -- same as a known tag except for case.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/CyVersion.java>:93:
 warning - @inheritdoc is an unknown tag -- same as a known tag except for case.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/CyVersion.java>:100:
 warning - @inheritdoc is an unknown tag -- same as a known tag except for case.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/CyVersion.java>:107:
 warning - @inheritdoc is an unknown tag -- same as a known tag except for case.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java>:75:
 warning - @beaninfo is an unknown tag.
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-javadoc.jar>
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-SNAPSHOT.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-javadoc.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-SNAPSHOT-javadoc.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-sources.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[INFO] Installing 
org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-SNAPSHOT.jar
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-20101115.210316-17.jar
7239K uploaded  (swing-application-impl-1.0-20101115.210316-17.jar)
[INFO] Retrieving previous metadata from snapshots
[INFO] Uploading repository metadata for: 'artifact 
org.cytoscape:swing-application-impl'
[INFO] Retrieving previous metadata from snapshots
[INFO] Uploading repository metadata for: 'snapshot 
org.cytoscape:swing-application-impl:1.0-SNAPSHOT'
[INFO] Uploading project information for swing-application-impl 
1.0-20101115.210316-17
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-20101115.210316-17-javadoc.jar
410K uploaded  (swing-application-impl-1.0-20101115.210316-17-javadoc.jar)
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/swing-application-impl/1.0-SNAPSHOT/swing-application-impl-1.0-20101115.210316-17-sources.jar
7203K uploaded  (swing-application-impl-1.0-20101115.210316-17-sources.jar)
[INFO] [bundle:deploy]
[INFO] Remote OBR update disabled (enable with -DremoteOBR)
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/pom.xml>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing 
Application 
Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-15_16-02-21/archive/org.cytoscape/swing-application-impl/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing 
Application 
Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-15_16-02-21/archive/org.cytoscape/swing-application-impl/1.0-20101115.210316-17/swing-application-impl-1.0-SNAPSHOT.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-javadoc.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing 
Application 
Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-15_16-02-21/archive/org.cytoscape/swing-application-impl/1.0-20101115.210316-17/swing-application-impl-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/swing-application-impl-1.0-SNAPSHOT-sources.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Swing 
Application 
Impl/modules/org.cytoscape$swing-application-impl/builds/2010-11-15_16-02-21/archive/org.cytoscape/swing-application-impl/1.0-20101115.210316-17/swing-application-impl-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56 seconds
[INFO] Finished at: Mon Nov 15 16:03:19 EST 2010
[INFO] Final Memory: 73M/709M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building Cytoscape Swing Application Impl
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.2
[INFO] [sonar-core:internal]
[INFO]  Database dialect class org.sonar.api.database.dialect.MySql
[INFO]  -------------  Analyzing Cytoscape Swing Application Impl
[INFO]  Selected quality profile : Cytoscape, language=java
[INFO]  Configure maven plugins...
[INFO]  Sensor JavaSourceImporter...
[INFO]  Sensor JavaSourceImporter done: 559 ms
[INFO]  Sensor AsynchronousMeasuresSensor...
[INFO]  Sensor AsynchronousMeasuresSensor done: 29 ms
[INFO]  Sensor SquidSensor...
[INFO]  Java AST scan...
[INFO]  Java AST scan done: 878 ms
[INFO]  Java bytecode scan...
[WARN]  Class '[Lorg/cytoscape/internal/view/CyDesktopManager$Arrange;' is not 
accessible through the ClassLoader.
[INFO]  Java bytecode scan done: 845 ms
[INFO]  Squid extraction...
[INFO]  Package design analysis...
[INFO]  Package design analysis done: 23 ms
[INFO]  Squid extraction done: 1035 ms
[INFO]  Sensor SquidSensor done: 2850 ms
[INFO]  Sensor ProfileSensor...
[INFO]  Sensor ProfileSensor done: 17 ms
[INFO]  Sensor ProjectLinksSensor...
[INFO]  Sensor ProjectLinksSensor done: 5 ms
[INFO]  Sensor VersionEventsSensor...
[INFO]  Sensor VersionEventsSensor done: 36 ms
[INFO]  Sensor Maven dependencies...
[INFO]  Sensor Maven dependencies done: 182 ms
[INFO]  Execute maven plugin findbugs-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building Cytoscape Swing Application Impl
[INFO]    task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing findbugs:findbugs
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Can not execute Sonar

Embedded error: Unable to execute maven plugin
The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no 
valid version could be found
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10 seconds
[INFO] Finished at: Mon Nov 15 16:03:41 EST 2010
[INFO] Final Memory: 57M/601M
[INFO] ------------------------------------------------------------------------

-- 
You received this message because you are subscribed to the Google Groups 
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to 
[email protected].
For more options, visit this group at 
http://groups.google.com/group/cytoscape-cvs?hl=en.

Reply via email to