Dear community,
installation of deal.ii was successful. Since some troubleshooting was
necessary and I am not sure if I made optimal choices, I share this notes
for general use.
After checking out the "develop" branch on spack, and running "spack
install dealii" indeed installation proceeded smoothly until
==> Installing mumps-5.3.3-olqmswsgulvvy6ygrupfc6v5eb53hcho
==> No binary for mumps-5.3.3-olqmswsgulvvy6ygrupfc6v5eb53hcho found:
installing from source
==> Using cached archive:
/home/dealii/spack/var/spack/cache/_source-cache/archive/27/27e7749ac05006bf8e81a457c865402bb72a42bf3bc673da49de1020f0f32011.tar.gz
1 out of 2 hunks FAILED -- saving rejects to file src/Makefile.rej
==> Patch
/home/dealii/spack/var/spack/repos/builtin/packages/mumps/mumps.src-makefile.patch
failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i'
'/home/dealii/spack/var/spack/repos/builtin/packages/mumps/mumps.src-makefile.patch'
'-d' '.'
==> Warning: Skipping build of
trilinos-13.0.1-z5tsc4yuh5pgruwxdblmvadgnrm75zze since
mumps-5.3.3-olqmswsgulvvy6ygrupfc6v5eb53hcho failed
==> Warning: Skipping build of dealii-9.2-47ohsoit2h2ldxhphy5jnzkp5w7uiieq
since trilinos-13.0.1-z5tsc4yuh5pgruwxdblmvadgnrm75zze failed
Since I had a previous version of mumps installed with deal.ii 9.1.1, I
edited the packages.yaml accordingly. The outcome was
==> Warning: detected deprecated properties in
/home/dealii/.spack/linux/packages.yaml
Activate the debug flag to have more information on the deprecated parts or
run:
$ spack config update packages
to update the file to the new format
but nonetheless trilinos was installed apparently seamless. Issues arose in
the final step
==> Installing dealii-9.2.0-tuadcqxmwatzcdlwqkhgnucvw7hg53d6
==> No binary for dealii-9.2.0-tuadcqxmwatzcdlwqkhgnucvw7hg53d6 found:
installing from source
==> Fetching
https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz
################################################################################################################################################################################################
100.0%
==> Fetching
https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/5f/5f9f411ab9336bf49d8293b9936344bad6e1cf720955b9d8e8b29883593b0ed9
################################################################################################################################################################################################
100.0%
==> dealii: Executing phase: 'cmake'
==> dealii: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'ninja' '-j16' '-v'
as follows:
1921 [959/1181] : &&
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openmpi-4.0.5-uypgqbrt75u6khisbrzwqjwvfeokv3lu/bin/mpic++
-rdynamic -Wl,--as-needed -rdynamic -fuse-ld=
gold -L/usr/lib/gcc/x86_64-linux-gnu/7/ -lgfortran -ggdb
examples/CMakeFiles/step-56.debug.dir/step-56/step-56.cc.o -o
bin/step-56.debug -L/home/dealii/spack/opt/spack/linux-ubuntu18.04
-skylake/gcc-7.5.0/intel-tbb-2020.3-xpfvmpzz3yrii7dsder2eiwkgismvzvz/lib
-Wl,-rpath,/tmp/dealii/spack-stage/spack-stage-dealii-9.2.0-tuadcqxmwatzcdlwqkhgnucvw7hg53d6/spack-build-tuadcqx
/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/intel-tbb-2020.3-xpfvmpzz3yrii7dsder2eiwkgismvzvz/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.
5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib:/home/dealii/spa
ck/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brb
aojd4han2pwqdslnxw4tzlr2lg/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib:/home/dealii/spack/opt/spack/linu
x-ubuntu18.04-skylake/gcc-7.5.0/adol-c-2.7.2-babl2rlaxr76pnd3555mas4vjuymiile/lib64:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.0-rc3isvbtxendtaempi7t
74ikosltfhsx/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/assimp-4.0.1-glx2xnx7oid2ayjkmqj7mfwswffmk3ia/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylak
e/gcc-7.5.0/gsl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/muparser-2.2.6.1-bbufdhd2q5hawm2w22xmod5qo3ogmjao/lib:/home/dea
lii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmh
zzqxe7x74dle2tsm2ehzpfqdhs/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/netlib-scalapack-2.1.0-z75ecnvuj2f4lmahtujyyhivyif5ycj6/lib:/home/dealii/spack/opt/spack/
linux-ubuntu18.04-skylake/gcc-7.5.0/slepc-3.14.1-r2mlzwjseeggftbuucek5isfl77bjsbg/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/petsc-3.14.1-2ougfm6rq4eyui4xqfeac
saminnk3g3j/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hypre-2.20.0-gxamjchraomkzvxbkyw5iomwetsgs42y/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake
/gcc-7.5.0/superlu-dist-6.4.0-rmiklyvwbbt43hqdirs5teolapo42ehw/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openblas-0.3.13-rdcfnb5vanisjm5jwfymqnubvalw2p7g/lib:
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/parmet
is-4.0.3-ctkvdv4r3s53vcjmh3lj7ofva64pfxm3/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/metis-5.1.0-5nhfc72ai2qxmtzp5yo2asgnj5lpvtpk/lib:/home/dealii/spack/opt/sp
ack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/symengine-0.6.0-by2wo5lc2fdq
jaq4nx73ukopbsiiriao/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gmp-6.1.2-eccwifch7wiznkg5z5lvkcqo4phpg2vv/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-s
kylake/gcc-7.5.0/mpc-1.1.0-hdara4muh5idq45qfhxyklkdydw6h2kr/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mpfr-4.0.2-ke4vba5vg4mwmoymqrs3p32ylhinwy67/lib:
lib/li
bdeal_II.g.so.9.2.0 -ltbb_debug
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_iostreams-mt.so
/home/deal
ii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_serialization-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sky
lake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_system-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7
ufc5fgzx2iffo/lib/libboost_thread-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_regex-mt.so
/home/d
ealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_chrono-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake
/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_date_time-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7u
fc5fgzx2iffo/lib/libboost_atomic-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo.so
/home/dealii/spa
ck/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo_reference.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5
.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo_omp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib
/libginkgo_cuda.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu-adapters.so
/home/dealii/spack/opt/sp
ack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu-interface.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/tril
inos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libif
pack2.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libanasazitpetra.so
/home/dealii/spack/opt/spack/linux-u
buntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libModeLaplace.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llb
xgwjqhddj2kcanfec7edkbnbg3gep/lib/libanasaziepetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libanasazi.s
o
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libamesos2.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sk
ylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelosxpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kca
nfec7edkbnbg3gep/lib/libbelostpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelosepetra.so
/home/de
alii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelos.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5
.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libml.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/l
ibifpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libzoltan2.so
/home/dealii/spack/opt/spack/linux-ubun
tu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libamesos.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhdd
j2kcanfec7edkbnbg3gep/lib/libgaleri-xpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libgaleri-epetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libaztecoo.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skyl
ake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libxpetra-sup.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfe
c7edkbnbg3gep/lib/libxpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtrilinosss.so
/home/dealii/spac
k/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraext.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/tr
ilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetrainout.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/l
ib/libtpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkostsqr.so
/home/dealii/spack/opt/spack/lin
ux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraclassiclinalg.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilino
s-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraclassicnodeapi.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3g
ep/lib/libtpetraclassic.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libepetraext.so
/home/dealii/spack/opt
/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtriutils.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos
-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libzoltan.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libepetr
a.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libsacado.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-
skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkoskernels.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj
2kcanfec7edkbnbg3gep/lib/libteuchoskokkoscomm.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchoskokkosc
ompat.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosremainder.so
/home/dealii/spack/opt/spack/linu
x-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosnumerics.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.
0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchoscomm.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuc
hosparameterlist.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosparser.so
/home/dealii/spack/opt/sp
ack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchoscore.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos
-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkosalgorithms.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/li
b/libkokkoscontainers.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkoscore.so
/home/dealii/spack/opt/
spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libgtest.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-
4f3brbaojd4han2pwqdslnxw4tzlr2lg/lib/libdmumps.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4han2pwqdslnxw4tzlr2lg/lib/libmumps_common.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4han2pwqdslnxw4tzlr2lg/lib/libpord.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-
7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libumfpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqf
qoi46yc5/lib/libcholmod.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libccolamd.so
/home/dealii/spack/op
t/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libcolamd.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-
sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libcamd.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/li
bsuitesparseconfig.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libamd.so
-lrt /home/dealii/spack/opt/s
pack/linux-ubuntu18.04-skylake/gcc-7.5.0/adol-c-2.7.2-babl2rlaxr76pnd3555mas4vjuymiile/lib64/libadolc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.
0-rc3isvbtxendtaempi7t74ikosltfhsx/lib/libparpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.0-rc3isvbtxendtaempi7t74ikosltfhsx/lib/libarpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/assimp-4.0.1-glx2xnx7oid2ayjkmqj7mfwswffmk3ia/lib/libassimp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/
gcc-7.5.0/gsl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib/libgsl.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gsl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib/libgslcbl
as.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/muparser-2.2.6.1-bbufdhd2q5hawm2w22xmod5qo3ogmjao/lib/libmuparser.so
/home/dealii/spack/opt/spack/linux-ubuntu18
.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKBO.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzm
xyvfs/lib/libTKBool.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKBRep.so
/home/dealii/spack/opt/spack/linux
-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKernel.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7
fg4baa4bamzmxyvfs/lib/libTKFeat.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKFillet.so
/home/dealii/spack/o
pt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKG2d.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-ham
blqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKG3d.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKGeomAlgo.so
/home/d
ealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKGeomBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.
5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKHLR.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKIG
ES.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKMath.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skyl
ake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKMesh.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/
lib/libTKOffset.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKPrim.so
/home/dealii/spack/opt/spack/linux-ubu
ntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKShHealing.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7
fg4baa4bamzmxyvfs/lib/libTKSTEP.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEPAttr.so
/home/dealii/spack
/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEPBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.1
8.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEP209.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTL.so
/
home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKTopAlgo.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/g
cc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKXSBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmhzzqxe7x74dle2tsm2ehzpfqdhs/lib/
libp4est.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmhzzqxe7x74dle2tsm2ehzpfqdhs/lib/libsc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sky
lake/gcc-7.5.0/netlib-scalapack-2.1.0-z75ecnvuj2f4lmahtujyyhivyif5ycj6/lib/libscalapack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/slepc-3.14.1-r2mlzwjseeggftb
uucek5isfl77bjsbg/lib/libslepc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/petsc-3.14.1-2ougfm6rq4eyui4xqfeacsaminnk3g3j/lib/libpetsc.so
/home/dealii/spack/opt
/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hypre-2.20.0-gxamjchraomkzvxbkyw5iomwetsgs42y/lib/libHYPRE.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/superlu-dist-6
.4.0-rmiklyvwbbt43hqdirs5teolapo42ehw/lib/libsuperlu_dist.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openblas-0.3.13-rdcfnb5vanisjm5jwfymqnubvalw2p7g/lib/libop
enblas.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5hl_fortran.so
/home/dealii/spack/opt/spack/linux-ubu
ntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5_hl.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjs
kaj6ipkwvkjn6fp/lib/libhdf5_fortran.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5.so
/home/dealii/spack/
opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/parmetis-4.0.3-ctkvdv4r3s53vcjmh3lj7ofva64pfxm3/lib/libparmetis.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/metis-
5.1.0-5nhfc72ai2qxmtzp5yo2asgnj5lpvtpk/lib/libmetis.so -lz
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran
-lm -lpthread -lquadmath -ldl /home/dealii/spa
ck/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_idas.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.
0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_arkode.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46n
i7bq/lib/libsundials_kinsol.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_nvecserial.so
/home/dea
lii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_nvecparallel.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-s
kylake/gcc-7.5.0/symengine-0.6.0-by2wo5lc2fdqjaq4nx73ukopbsiiriao/lib/libsymengine.so.0.6.0
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gmp-6.1.2-eccwifch7wiznkg5z
5lvkcqo4phpg2vv/lib/libgmp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mpc-1.1.0-hdara4muh5idq45qfhxyklkdydw6h2kr/lib/libmpc.so
/home/dealii/spack/opt/spack/li
nux-ubuntu18.04-skylake/gcc-7.5.0/mpfr-4.0.2-ke4vba5vg4mwmoymqrs3p32ylhinwy67/lib/libmpfr.so
&& :
>> 1922 FAILED: bin/step-56.debug
1923 : &&
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openmpi-4.0.5-uypgqbrt75u6khisbrzwqjwvfeokv3lu/bin/mpic++
-rdynamic -Wl,--as-needed -rdynamic -fuse-ld=gold -L/usr
/lib/gcc/x86_64-linux-gnu/7/ -lgfortran -ggdb
examples/CMakeFiles/step-56.debug.dir/step-56/step-56.cc.o -o
bin/step-56.debug
-L/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gc
c-7.5.0/intel-tbb-2020.3-xpfvmpzz3yrii7dsder2eiwkgismvzvz/lib
-Wl,-rpath,/tmp/dealii/spack-stage/spack-stage-dealii-9.2.0-tuadcqxmwatzcdlwqkhgnucvw7hg53d6/spack-build-tuadcqx/lib:/home/
dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/intel-tbb-2020.3-xpfvmpzz3yrii7dsder2eiwkgismvzvz/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1
.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib:/home/dealii/spack/opt/spac
k/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4han2pw
qdslnxw4tzlr2lg/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.
04-skylake/gcc-7.5.0/adol-c-2.7.2-babl2rlaxr76pnd3555mas4vjuymiile/lib64:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.0-rc3isvbtxendtaempi7t74ikosltfhs
x/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/assimp-4.0.1-glx2xnx7oid2ayjkmqj7mfwswffmk3ia/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0
/gsl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/muparser-2.2.6.1-bbufdhd2q5hawm2w22xmod5qo3ogmjao/lib:/home/dealii/spack/o
pt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmhzzqxe7x74dl
e2tsm2ehzpfqdhs/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/netlib-scalapack-2.1.0-z75ecnvuj2f4lmahtujyyhivyif5ycj6/lib:/home/dealii/spack/opt/spack/linux-ubunt
u18.04-skylake/gcc-7.5.0/slepc-3.14.1-r2mlzwjseeggftbuucek5isfl77bjsbg/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/petsc-3.14.1-2ougfm6rq4eyui4xqfeacsaminnk3g3j
/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hypre-2.20.0-gxamjchraomkzvxbkyw5iomwetsgs42y/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/
superlu-dist-6.4.0-rmiklyvwbbt43hqdirs5teolapo42ehw/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openblas-0.3.13-rdcfnb5vanisjm5jwfymqnubvalw2p7g/lib:/home/deali
i/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/parmetis-4.0.3-ct
kvdv4r3s53vcjmh3lj7ofva64pfxm3/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/metis-5.1.0-5nhfc72ai2qxmtzp5yo2asgnj5lpvtpk/lib:/home/dealii/spack/opt/spack/linux-u
buntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/symengine-0.6.0-by2wo5lc2fdqjaq4nx73uko
pbsiiriao/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gmp-6.1.2-eccwifch7wiznkg5z5lvkcqo4phpg2vv/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-
7.5.0/mpc-1.1.0-hdara4muh5idq45qfhxyklkdydw6h2kr/lib:/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mpfr-4.0.2-ke4vba5vg4mwmoymqrs3p32ylhinwy67/lib:
lib/libdeal_II.g.
so.9.2.0 -ltbb_debug
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_iostreams-mt.so
/home/dealii/spack/op
t/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_serialization-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.
5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_system-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2if
fo/lib/libboost_thread-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_regex-mt.so
/home/dealii/spack
/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_chrono-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/
boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iffo/lib/libboost_date_time-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/boost-1.75.0-zmheqn5sfk2zj2dzaj7ufc5fgzx2iff
o/lib/libboost_atomic-mt.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo.so
/home/dealii/spack/opt/spac
k/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo_reference.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1
.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo_omp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/ginkgo-1.3.0-ivhwslq3ln27s2nllnk2rl2xy3jbm6q5/lib/libginkgo_
cuda.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu-adapters.so
/home/dealii/spack/opt/spack/linux-u
buntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu-interface.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1
-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libmuelu.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libifpack2.so
/
home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libanasazitpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-
skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libModeLaplace.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2k
canfec7edkbnbg3gep/lib/libanasaziepetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libanasazi.so
/home/de
alii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libamesos2.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7
.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelosxpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnb
g3gep/lib/libbelostpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelosepetra.so
/home/dealii/spack/
opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libbelos.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos
-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libml.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libifpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libzoltan2.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sky
lake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libamesos.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7e
dkbnbg3gep/lib/libgaleri-xpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libgaleri-epetra.so
/home/deal
ii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libaztecoo.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5
.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libxpetra-sup.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3g
ep/lib/libxpetra.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtrilinosss.so
/home/dealii/spack/opt/spack
/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraext.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0
.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetrainout.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetr
a.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkostsqr.so
/home/dealii/spack/opt/spack/linux-ubuntu18
.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraclassiclinalg.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-ll
bxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtpetraclassicnodeapi.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libt
petraclassic.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libepetraext.so
/home/dealii/spack/opt/spack/linu
x-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libtriutils.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llb
xgwjqhddj2kcanfec7edkbnbg3gep/lib/libzoltan.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libepetra.so
/home
/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libsacado.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc
-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkoskernels.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7ed
kbnbg3gep/lib/libteuchoskokkoscomm.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchoskokkoscompat.so
/
home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosremainder.so
/home/dealii/spack/opt/spack/linux-ubuntu18.
04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosnumerics.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwj
qhddj2kcanfec7edkbnbg3gep/lib/libteuchoscomm.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosparamete
rlist.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchosparser.so
/home/dealii/spack/opt/spack/linux-u
buntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libteuchoscore.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llb
xgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkosalgorithms.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkos
containers.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libkokkoscore.so
/home/dealii/spack/opt/spack/linux
-ubuntu18.04-skylake/gcc-7.5.0/trilinos-13.0.1-llbxgwjqhddj2kcanfec7edkbnbg3gep/lib/libgtest.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4
han2pwqdslnxw4tzlr2lg/lib/libdmumps.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4han2pwqdslnxw4tzlr2lg/lib/libmumps_common.so
/home/deali
i/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mumps-5.2.0-4f3brbaojd4han2pwqdslnxw4tzlr2lg/lib/libpord.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite
-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libumfpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/li
b/libcholmod.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libccolamd.so
/home/dealii/spack/opt/spack/lin
ux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libcolamd.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.
1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libcamd.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libsuitespars
econfig.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/suite-sparse-5.8.1-ttq3657queny6vzzww7vszqfqoi46yc5/lib/libamd.so
-lrt /home/dealii/spack/opt/spack/linux-
ubuntu18.04-skylake/gcc-7.5.0/adol-c-2.7.2-babl2rlaxr76pnd3555mas4vjuymiile/lib64/libadolc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.0-rc3isvbtx
endtaempi7t74ikosltfhsx/lib/libparpack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/arpack-ng-3.8.0-rc3isvbtxendtaempi7t74ikosltfhsx/lib/libarpack.so
/home/deal
ii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/assimp-4.0.1-glx2xnx7oid2ayjkmqj7mfwswffmk3ia/lib/libassimp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/g
sl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib/libgsl.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gsl-2.6-fr6zebiaqzkc6ozdpgwlgwjw6bwimwfo/lib/libgslcblas.so
/hom
e/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/muparser-2.2.6.1-bbufdhd2q5hawm2w22xmod5qo3ogmjao/lib/libmuparser.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake
/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKBO.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/l
ibTKBool.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKBRep.so
/home/dealii/spack/opt/spack/linux-ubuntu18.0
4-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKernel.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamz
mxyvfs/lib/libTKFeat.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKFillet.so
/home/dealii/spack/opt/spack/li
nux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKG2d.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg
7fg4baa4bamzmxyvfs/lib/libTKG3d.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKGeomAlgo.so
/home/dealii/spack
/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKGeomBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.1
8.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKHLR.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKIGES.so
/hom
e/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKMath.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5
.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKMesh.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKOf
fset.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKPrim.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sk
ylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKShHealing.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamz
mxyvfs/lib/libTKSTEP.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEPAttr.so
/home/dealii/spack/opt/spack/
linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEPBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqw
xtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTEP209.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKSTL.so
/home/dealii
/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oce-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKTopAlgo.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/oc
e-0.18.3-hamblqwxtejxxg7fg4baa4bamzmxyvfs/lib/libTKXSBase.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmhzzqxe7x74dle2tsm2ehzpfqdhs/lib/libp4est.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/p4est-2.2-velrmhzzqxe7x74dle2tsm2ehzpfqdhs/lib/libsc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.
5.0/netlib-scalapack-2.1.0-z75ecnvuj2f4lmahtujyyhivyif5ycj6/lib/libscalapack.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/slepc-3.14.1-r2mlzwjseeggftbuucek5isfl7
7bjsbg/lib/libslepc.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/petsc-3.14.1-2ougfm6rq4eyui4xqfeacsaminnk3g3j/lib/libpetsc.so
/home/dealii/spack/opt/spack/linu
x-ubuntu18.04-skylake/gcc-7.5.0/hypre-2.20.0-gxamjchraomkzvxbkyw5iomwetsgs42y/lib/libHYPRE.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/superlu-dist-6.4.0-rmikly
vwbbt43hqdirs5teolapo42ehw/lib/libsuperlu_dist.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/openblas-0.3.13-rdcfnb5vanisjm5jwfymqnubvalw2p7g/lib/libopenblas.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5hl_fortran.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-sk
ylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5_hl.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkj
n6fp/lib/libhdf5_fortran.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/hdf5-1.10.7-xqvpzaheb7samdgjskaj6ipkwvkjn6fp/lib/libhdf5.so
/home/dealii/spack/opt/spack/l
inux-ubuntu18.04-skylake/gcc-7.5.0/parmetis-4.0.3-ctkvdv4r3s53vcjmh3lj7ofva64pfxm3/lib/libparmetis.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/metis-5.1.0-5nhfc
72ai2qxmtzp5yo2asgnj5lpvtpk/lib/libmetis.so -lz
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran
-lm -lpthread -lquadmath -ldl /home/dealii/spack/opt/spac
k/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_idas.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-
3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_arkode.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/li
bsundials_kinsol.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_nvecserial.so
/home/dealii/spack/o
pt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/sundials-3.2.1-r4mumobygmp6fx53cuelcm4ea46ni7bq/lib/libsundials_nvecparallel.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-
7.5.0/symengine-0.6.0-by2wo5lc2fdqjaq4nx73ukopbsiiriao/lib/libsymengine.so.0.6.0
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/gmp-6.1.2-eccwifch7wiznkg5z5lvkcqo4php
g2vv/lib/libgmp.so
/home/dealii/spack/opt/spack/linux-ubuntu18.04-skylake/gcc-7.5.0/mpc-1.1.0-hdara4muh5idq45qfhxyklkdydw6h2kr/lib/libmpc.so
/home/dealii/spack/opt/spack/linux-ubuntu1
8.04-skylake/gcc-7.5.0/mpfr-4.0.2-ke4vba5vg4mwmoymqrs3p32ylhinwy67/lib/libmpfr.so
&& :
>> 1924 lib/libdeal_II.g.so.9.2.0: error: undefined reference to
'gko::OmpExecutor::raw_copy_to(gko::HipExecutor const*, unsigned long, void
const*, void*) const'
>> 1925 lib/libdeal_II.g.so.9.2.0: error: undefined reference to
'typeinfo for gko::HipExecutor'
>> 1926 collect2: error: ld returned 1 exit status
I wondered if this error was related to mumps and dependences of ginkgo. I
attempted therefore at using the older version of ginkgo as well,
ginkgo-1.1.0. With such a version, no further errors arose and
==> Installing dealii-9.2.0-ixyu3bhuwzk3ydljzr64vspiwnqcqyoa
==> No binary for dealii-9.2.0-ixyu3bhuwzk3ydljzr64vspiwnqcqyoa found:
installing from source
==> Using cached archive:
/home/dealii/spack/var/spack/cache/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz
==> Using cached archive:
/home/dealii/spack/var/spack/cache/_source-cache/archive/5f/5f9f411ab9336bf49d8293b9936344bad6e1cf720955b9d8e8b29883593b0ed9
==> dealii: Executing phase: 'cmake'
==> dealii: Executing phase: 'build'
==> dealii: Executing phase: 'install'
==> dealii: Successfully installed
dealii-9.2.0-ixyu3bhuwzk3ydljzr64vspiwnqcqyoa
Fetch: 0.14s. Build: 16m 12.77s. Total: 16m 12.91s.
Alberto
Il giorno venerdì 15 gennaio 2021 alle 17:44:44 UTC+1 Jean-Paul Pelteret ha
scritto:
> Hi Alberto,
>
> Thanks for pointing out that the Wiki is out of date. I've updated that
> portion of the page with the correct information.
>
> Best,
> Jean-Paul
>
>
> On 15.01.21 09:25, Alberto Salvadori wrote:
>
> Thank you, very useful.
> I suggest adding this info to the wiki page , in place of git checkout
> master.
>
>
> *Alberto Salvadori * Dipartimento di Ingegneria Meccanica e Industriale
> (DIMI)
> Universita` di Brescia, via Branze 43, 25123 Brescia
> Italy
> tel 030 3715426
>
> e-mail:
> alberto....@unibs.it
> web-page:
> http://m4lab.unibs.it/faculty.html
>
>
>
> On Thu, Jan 14, 2021 at 7:57 PM Jean-Paul Pelteret <jppel...@gmail.com>
> wrote:
>
>> Hi Alberto,
>>
>> I concur with Bruno. ADOL-C changed the location of their project and
>> repository, so Spack's master branch must be directing you towards the old
>> site. Clearly it doesn't have an updated package for deal.II either,
>> because its trying to deduce the location of the deal.II tarball on GitHub.
>> Using Spack's "develop" branch is the way to keep up to date with the
>> latest developments or, should you want to be a little more conservative,
>> you could check out their latest tag, which is v0.16.0
>> <https://github.com/spack/spack/tree/v0.16.0> .
>>
>> Best,
>> Jean-Paul
>>
>> On 14.01.21 19:37, Bruno Turcksin wrote:
>>
>> Alberto,
>>
>> Do not use the master branch in spack. The last commit from the master
>> branch on spack is from 2018. I'm guessing you want to use develop. develop
>> for spack is the equivalent of master in deal.II
>>
>> Best,
>>
>> Bruno
>>
>> On Thursday, January 14, 2021 at 1:20:09 PM UTC-5 Alberto Salvadori wrote:
>>
>>> Dear community
>>>
>>> I have been trying installing dealii@9.2 on ubuntu 18.04 gcc7.5.0,
>>> unsuccesfully.
>>> The version 9.1.1 is already installed and works just fine, at that
>>> installation time
>>> I did manage to install ado...@2.7.3 and I put its path into the
>>> pacages.yaml
>>> as I did for dea...@9.1.1
>>> URL in fetch seem to be wrong, in fact they do not exist, if I am not
>>> misunderdanding.
>>> Any suggestion is appreciated.
>>> Alberto
>>>
>>> I did the following:
>>>
>>> 1 - in spack directory
>>> git checkout master
>>>
>>> response: your branch is up to date with 'origin/master'
>>>
>>> 2 - in the same directory
>>> spack install dealii@9.2
>>>
>>> response:
>>> Warning: Missing a source id for ado...@2.7.3
>>> Warning: Missing a source id for dealii@9.2
>>>
>>> ==> 26892: Installing dealii
>>> ==> Warning: There is no checksum on file to fetch dealii@9.2 safely.
>>> ==> Fetch anyway? [y/N] y
>>> ==> Fetching with no checksum.
>>> Add a checksum or use --no-checksum to skip this check.
>>> ==> Fetching
>>> https://github.com/dealii/dealii/releases/download/v9.2/dealii-9.2.tar.gz
>>> #=#=- # #
>>>
>>>
>>> #=O=# # #
>>>
>>>
>>>
>>> curl: (22) The requested URL returned error: 404
>>> ==> Failed to fetch file from URL:
>>> https://github.com/dealii/dealii/releases/download/v9.2/dealii-9.2.tar.gz
>>> URL
>>> https://github.com/dealii/dealii/releases/download/v9.2/dealii-9.2.tar.gz
>>> was
>>> not found!
>>> ==> Fetching from
>>> https://github.com/dealii/dealii/releases/download/v9.2/dealii-9.2.tar.gz
>>> failed.
>>> ==> Error: FetchError: All fetchers failed for
>>> spack-stage-dealii-9.2-s4o6vff2suxztaxmilrhrzts34jngztn
>>>
>>> /home/dealii/spack/lib/spack/spack/package.py:1127, in do_fetch:
>>> 1124 raise FetchError("Will not fetch %s" %
>>> 1125
>>> self.spec.format('{name}{@version}'), ck_msg)
>>> 1126
>>> >> 1127 self.stage.create()
>>> 1128 self.stage.fetch(mirror_only)
>>> 1129 self._fetch_time = time.time() - start_time
>>> 1130
>>>
>>>
>>> ==> Error: Failed to install dealii due to ChildError: FetchError: All
>>> fetchers failed for spack-stage-dealii-9.2-s4o6vff2suxztaxmilrhrzts34jngztn
>>> /home/dealii/spack/lib/spack/spack/package.py:1127, in do_fetch:
>>> 1124 raise FetchError("Will not fetch %s" %
>>> 1125
>>> self.spec.format('{name}{@version}'), ck_msg)
>>> 1126
>>> >> 1127 self.stage.create()
>>> 1128 self.stage.fetch(mirror_only)
>>> 1129 self._fetch_time = time.time() - start_time
>>> 1130
>>>
>>> Traceback (most recent call last):
>>> File "/home/dealii/spack/lib/spack/spack/build_environment.py", line
>>> 801, in child_process
>>> return_value = function()
>>> File "/home/dealii/spack/lib/spack/spack/installer.py", line 1046, in
>>> build_process
>>> pkg.do_patch()
>>> File "/home/dealii/spack/lib/spack/spack/package.py", line 1167, in
>>> do_patch
>>> self.do_stage()
>>> File "/home/dealii/spack/lib/spack/spack/package.py", line 1152, in
>>> do_stage
>>> self.do_fetch(mirror_only)
>>> File "/home/dealii/spack/lib/spack/spack/package.py", line 1128, in
>>> do_fetch
>>> self.stage.fetch(mirror_only)
>>> File "/home/dealii/spack/lib/spack/spack/util/pattern.py", line 68, in
>>> getter
>>> getattr(item, self.name)(*args, **kwargs)
>>> File "/home/dealii/spack/lib/spack/spack/stage.py", line 476, in fetch
>>> raise fs.FetchError(err_msg, None)
>>> spack.fetch_strategy.FetchError: All fetchers failed for
>>> spack-stage-dealii-9.2-s4o6vff2suxztaxmilrhrzts34jngztn
>>>
>>>
>>>
>>>
>>>
>>>
>>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to dealii+un...@googlegroups.com.
>> To view this discussion on the web visit
>> https://groups.google.com/d/msgid/dealii/60e82a7b-7a9f-4048-ab60-3b79eabe93fen%40googlegroups.com
>>
>> <https://groups.google.com/d/msgid/dealii/60e82a7b-7a9f-4048-ab60-3b79eabe93fen%40googlegroups.com?utm_medium=email&utm_source=footer>
>> .
>>
>>
>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to dealii+un...@googlegroups.com.
>> To view this discussion on the web visit
>> https://groups.google.com/d/msgid/dealii/b9c8050a-80d9-646d-8c17-96f433cc9fcc%40gmail.com
>>
>> <https://groups.google.com/d/msgid/dealii/b9c8050a-80d9-646d-8c17-96f433cc9fcc%40gmail.com?utm_medium=email&utm_source=footer>
>> .
>>
>
>
> Informativa sulla Privacy: http://www.unibs.it/node/8155
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to the Google Groups
> "deal.II User Group" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to dealii+un...@googlegroups.com.
>
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/dealii/CABcATpe%3D38Z_6V0izMMdqM0-ERbeQpUjy3WoryRht6OLzAcXHA%40mail.gmail.com
>
> <https://groups.google.com/d/msgid/dealii/CABcATpe%3D38Z_6V0izMMdqM0-ERbeQpUjy3WoryRht6OLzAcXHA%40mail.gmail.com?utm_medium=email&utm_source=footer>
> .
>
>
>
--
Informativa sulla Privacy: http://www.unibs.it/node/8155
<http://www.unibs.it/node/8155>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to dealii+unsubscr...@googlegroups.com.
To view this discussion on the web visit
https://groups.google.com/d/msgid/dealii/4fd95a4f-69f5-47ac-bd56-f71baa66eb08n%40googlegroups.com.
