Are you sure? I actually have working pop-up notifications with
notification-daemon installed while mate-notification-daemon is not
installed on Mate.
notification-daemon removed the dbus activation file and added an
autostart file here:
https://git.gnome.org/browse/notification-daemon/commit/data?id=1ad20d22098bc7718614a8a87744a2c22d5438d0
But I dont know about packages in debian, and if there are differences
between wheezy and jessie
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