Hi Gang, On Fri, 16 Jul 2010, [email protected] wrote: > If two images have different image headers, they are supposed to align > in the physical space, not in the image voxel space, for warping in > ANTS. good. that is what we thought/assumed... and that (alignment in physical space) means that having intermediate matrix of voxels to project to should not have an effect (besides possible quantization/dequantization into/from voxels), that is why we were surprised with the results
> I noticed you used two different images as references. Could you try > both use "-R epi_template.nii.gz" and verify if this issue still > exists? tested... script called reproduce2.sh from the same http://www.onerussian.com/Linux/bugs/ants.2steps/ produced result mni2bold-2-epi.nii.gz looks the same as previous "incorrect" mni2bold-2.nii.gz, so issue does still exist. if you run reproduce.sh, do you experience the same issue with your version of ants? > Also, are these image real 4D image or just 3D? If they are 3D, you > can try use WarpImageMultiTransform instead with the same syntax. I indeed could... script reproduce3.sh at the same location -- the same effect! > -Gang -- .-. =------------------------------ /v\ ----------------------------= Keep in touch // \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User ^^-^^ [175555] -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
