On Fri, 16 Jul 2010, brian avants wrote: > the order looks wrong to me ... would usually be either Warp Affine -i > Affine InverseWarp you appear to have: InverseWarp -i Affine man, this is a good one... indeed I've used incorrect order for mni2anat part -- we thought that first affine is taken as the approximation and then warp for non-linearity (and inverse order in 'reverse')... weird that it didn't matter much (seems to me, but didnd't check numerically).
Problem is though persists -- see script reproduce-order.sh, run it and compare mni2bold-2-order.nii.gz mni2bold-order.nii.gz please feel free to use those datafiles and scripts I've provided at http://www.onerussian.com/Linux/bugs/ants.2steps/ to ease the troubleshooting -- .-. =------------------------------ /v\ ----------------------------= Keep in touch // \\ (yoh@|www.)onerussian.com Yaroslav Halchenko /( )\ ICQ#: 60653192 Linux User ^^-^^ [175555] -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
