do you mean like in reproduce-order.sh which I gave for Brian?
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=589352#45

and it seems it didn't just exit but actually stored result (or am I
wrong? officially I am sleeping now ;))

On Sat, 17 Jul 2010, [email protected] wrote:

> After a quick test, I found a small problem of the second
> WarpMultiTransform in reproduce3.sh. Here is the output:
>  >...<
> Basically it did NOT perform the warping. We did this on purpose as
> a sanity check. Typically the transform sequence like
> "XXXInverseWarp.nii.gz -i XXXAffine.txt" is not a legit one; the
> more reasonable one would be "-i XXXAffine.txt
> XXXInverseWarp.nii.gz" instead.

> Could you try to switch the inverse warp and the inverse affine
> here? If you are sure that you want to put the inverse of affine at
> last, we probably would add some option like a "-force" to bypass
> the sanity check.
-- 
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Yaroslav Halchenko              /(   )\               ICQ#: 60653192
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