Author: tille Date: 2012-05-27 07:01:02 +0000 (Sun, 27 May 2012) New Revision: 11017
Added: trunk/packages/ngila/ trunk/packages/ngila/trunk/ trunk/packages/ngila/trunk/debian/ trunk/packages/ngila/trunk/debian/changelog trunk/packages/ngila/trunk/debian/compat trunk/packages/ngila/trunk/debian/control trunk/packages/ngila/trunk/debian/copyright trunk/packages/ngila/trunk/debian/rules trunk/packages/ngila/trunk/debian/upstream Log: Inject information from task file and WNPP bug Added: trunk/packages/ngila/trunk/debian/changelog =================================================================== --- trunk/packages/ngila/trunk/debian/changelog (rev 0) +++ trunk/packages/ngila/trunk/debian/changelog 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1,5 @@ +ngila (1.3-1) unstable; urgency=low + + * Initial release (Closes: #439996) + + -- Andreas Tille <[email protected]> Sun, 27 May 2012 08:49:50 +0200 Added: trunk/packages/ngila/trunk/debian/compat =================================================================== --- trunk/packages/ngila/trunk/debian/compat (rev 0) +++ trunk/packages/ngila/trunk/debian/compat 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1 @@ +9 Added: trunk/packages/ngila/trunk/debian/control =================================================================== --- trunk/packages/ngila/trunk/debian/control (rev 0) +++ trunk/packages/ngila/trunk/debian/control 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1,31 @@ +Source: ngila +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://scit.us/projects/ngila/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ngila/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ngila/trunk/ + +Package: ngila +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: global pairwise alignments with logarithmic and affine gap costs + Ngila is an application that will find the best alignment of a pair + of sequences using log-affine gap costs, which are the most + biologically realistic gap costs. + . + Ngila implements the Miller and Myers (1988) algorithm in order to + find a least costly global alignment of two sequences given homology + costs and a gap cost. Two versions of the algorithm are + included: holistic and divide-and-conquer. The former is faster but + the latter utilizes less memory. Ngila starts with the + divide-and-conquer method but switches to the holistic method for + subsequences smaller than a user-established threshold. This improves + its speed without substantially increasing memory requirements. Ngila + also allows users to assign costs to end gaps that are smaller than + costs for internal gaps. This is important for aligning using the + free-end-gap method. Added: trunk/packages/ngila/trunk/debian/copyright =================================================================== --- trunk/packages/ngila/trunk/debian/copyright (rev 0) +++ trunk/packages/ngila/trunk/debian/copyright 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1,10 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://scit.us/projects/ngila/downloads + +Files: * +Copyright: © 2008-2011 Reed A. Cartwright <[email protected]> +License: GPLv3 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPLv3 Added: trunk/packages/ngila/trunk/debian/rules =================================================================== --- trunk/packages/ngila/trunk/debian/rules (rev 0) +++ trunk/packages/ngila/trunk/debian/rules 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/ngila/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/ngila/trunk/debian/upstream =================================================================== --- trunk/packages/ngila/trunk/debian/upstream (rev 0) +++ trunk/packages/ngila/trunk/debian/upstream 2012-05-27 07:01:02 UTC (rev 11017) @@ -0,0 +1,12 @@ +Reference: + Author: Reed A. Cartwright + Title: "Ngila: global pairwise alignments with logarithmic and affine gap costs" + Journal: Bioinformatics + Year: 2007 + Volume: 23 + Number: 11 + Pages: 1427-1428 + DOI: 10.1093/bioinformatics/btm095 + PMID: 17387111 + URL: http://bioinformatics.oxfordjournals.org/content/23/11/1427 + eprint: http://bioinformatics.oxfordjournals.org/content/23/11/1427.full.pdf+html _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
