Author: tille Date: 2012-05-27 07:15:55 +0000 (Sun, 27 May 2012) New Revision: 11018
Added: trunk/packages/lagan/ trunk/packages/lagan/trunk/ trunk/packages/lagan/trunk/debian/ trunk/packages/lagan/trunk/debian/changelog trunk/packages/lagan/trunk/debian/compat trunk/packages/lagan/trunk/debian/control trunk/packages/lagan/trunk/debian/copyright trunk/packages/lagan/trunk/debian/rules trunk/packages/lagan/trunk/debian/upstream Log: Information from task file as packaging code in SVN Added: trunk/packages/lagan/trunk/debian/changelog =================================================================== --- trunk/packages/lagan/trunk/debian/changelog (rev 0) +++ trunk/packages/lagan/trunk/debian/changelog 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1,5 @@ +lagan (2.0-1) unstable; urgency=low + + * Initial release + + -- Andreas Tille <[email protected]> Sun, 27 May 2012 09:07:22 +0200 Added: trunk/packages/lagan/trunk/debian/compat =================================================================== --- trunk/packages/lagan/trunk/debian/compat (rev 0) +++ trunk/packages/lagan/trunk/debian/compat 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1 @@ +9 Added: trunk/packages/lagan/trunk/debian/control =================================================================== --- trunk/packages/lagan/trunk/debian/control (rev 0) +++ trunk/packages/lagan/trunk/debian/control 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1,22 @@ +Source: lagan +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://lagan.stanford.edu/lagan_web/index.shtml +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/lagan/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/lagan/trunk/ + +Package: lagan +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: highly parametrizable pairwise global alignment program + Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of + the Needleman-Wunsch algorithm around these anchors. + . + Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. + M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic + tree. Alignments are aligned to other alignments using the sum-of-pairs metric. Added: trunk/packages/lagan/trunk/debian/copyright =================================================================== --- trunk/packages/lagan/trunk/debian/copyright (rev 0) +++ trunk/packages/lagan/trunk/debian/copyright 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1,10 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://lagan.stanford.edu/lagan_web/lagan20.tar.gz + +Files: * +Copyright: © 2003 Michael Brudno, Chuong Do, et. al. +License: GPL-v3 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPL-v3 Added: trunk/packages/lagan/trunk/debian/rules =================================================================== --- trunk/packages/lagan/trunk/debian/rules (rev 0) +++ trunk/packages/lagan/trunk/debian/rules 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/lagan/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/lagan/trunk/debian/upstream =================================================================== --- trunk/packages/lagan/trunk/debian/upstream (rev 0) +++ trunk/packages/lagan/trunk/debian/upstream 2012-05-27 07:15:55 UTC (rev 11018) @@ -0,0 +1,12 @@ +Reference: + Author: Michael Brudno and Chuong Do and Gregory Cooper and Michael F. Kim and Eugene Davydov and Eric D. Green and Arend Sidow and Serafim Batzoglou + Title: "LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA" + Journal: Genome Research + Year: 2003 + Volume: 13 + Number: 4 + Pages: 721-31 + DOI: 10.1101/gr.926603 + PMID: 12654723 + URL: http://genome.cshlp.org/content/13/4/721 + eprint: http://genome.cshlp.org/content/13/4/721.full.pdf+html _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
