Author: tille Date: 2012-05-27 07:32:09 +0000 (Sun, 27 May 2012) New Revision: 11019
Added: trunk/packages/crossbow/ trunk/packages/crossbow/trunk/ trunk/packages/crossbow/trunk/debian/ trunk/packages/crossbow/trunk/debian/changelog trunk/packages/crossbow/trunk/debian/compat trunk/packages/crossbow/trunk/debian/control trunk/packages/crossbow/trunk/debian/copyright trunk/packages/crossbow/trunk/debian/rules trunk/packages/crossbow/trunk/debian/upstream Log: Move information from task file to SVN code Added: trunk/packages/crossbow/trunk/debian/changelog =================================================================== --- trunk/packages/crossbow/trunk/debian/changelog (rev 0) +++ trunk/packages/crossbow/trunk/debian/changelog 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1,5 @@ +crossbow (1.1.2-1) unstable; urgency=low + + * Initial release + + -- Andreas Tille <[email protected]> Sun, 27 May 2012 09:24:36 +0200 Added: trunk/packages/crossbow/trunk/debian/compat =================================================================== --- trunk/packages/crossbow/trunk/debian/compat (rev 0) +++ trunk/packages/crossbow/trunk/debian/compat 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1 @@ +9 Added: trunk/packages/crossbow/trunk/debian/control =================================================================== --- trunk/packages/crossbow/trunk/debian/control (rev 0) +++ trunk/packages/crossbow/trunk/debian/control 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1,23 @@ +Source: crossbow +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://bowtie-bio.sourceforge.net/crossbow +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/crossbow/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/crossbow/trunk/ + +Package: crossbow +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Genotyping from short reads using cloud computing + Crossbow is a scalable software pipeline for whole genome resequencing + analysis. It combines Bowtie, an ultrafast and memory efficient short read + aligner, and SoapSNP, an accurate genotyper, within Hadoop to distribute and + accelerate the computation with many nodes. The pipeline can accurately analyze + over 35x coverage of a human genome in one day on a 10-node local cluster, or + in 3 hours for about $100 using a 40-node, 320-core cluster rented from + Amazon's EC2 utility computing service. Added: trunk/packages/crossbow/trunk/debian/copyright =================================================================== --- trunk/packages/crossbow/trunk/debian/copyright (rev 0) +++ trunk/packages/crossbow/trunk/debian/copyright 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1,10 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://sourceforge.net/projects/bowtie-bio/files/crossbow/ + +Files: * +Copyright: © 2010-2011 <upstream> +License: Artistic + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: Artistic Added: trunk/packages/crossbow/trunk/debian/rules =================================================================== --- trunk/packages/crossbow/trunk/debian/rules (rev 0) +++ trunk/packages/crossbow/trunk/debian/rules 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/crossbow/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/crossbow/trunk/debian/upstream =================================================================== --- trunk/packages/crossbow/trunk/debian/upstream (rev 0) +++ trunk/packages/crossbow/trunk/debian/upstream 2012-05-27 07:32:09 UTC (rev 11019) @@ -0,0 +1,11 @@ +Reference: + Author: Ben Langmead and Michael C Schatz and Jimmy Lin and Mihai Pop and Steven L Salzberg + Title: Searching for SNPs with cloud computing + Journal: Genome Biology + Year: 2009 + Volume: 10 + Pages: R134 + DOI: 10.1186/gb-2009-10-11-r134 + PMID: 19930550 + URL: http://genomebiology.com/2009/10/11/R134 + eprint: http://genomebiology.com/content/pdf/gb-2009-10-11-r134.pdf _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
