Author: tille Date: 2015-10-31 19:59:15 +0000 (Sat, 31 Oct 2015) New Revision: 20368
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
Log:
Further reformatting
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
===================================================================
---
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
2015-10-31 19:01:25 UTC (rev 20367)
+++
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
2015-10-31 19:59:15 UTC (rev 20368)
@@ -1,77 +1,76 @@
-
+------------+
-
| cummerbund |
-
+------------+
-
^
-
|
-
+---+--+
-
| gviz |
-
+------+
-
^
- +-------+
|
- | edger |
+------+-----+
- +-------+
| biovizbase |
- ^
+------+-----+
- |
^
- +---+---+ +------------+ +--------+
|
- | limma | | hilbertvis | | qvalue |
+----------+--------+
- +-------+ +------------+ +--------+
| variantannotation |
- ^
+-------------------+
- :
^ ^
- :
| |
- +------+------+
+------------+----+ +-+---------+
- |cAAA go.db |
| genomicfeatures | | bsgenome |
- +-------------+ +--------------+
+-----------------+ +-----------+
- | altcdfenvs |
^ ^ ^
- +--------------+
| | |
- ^ ^ ^
| +--+-------+--+
- | | |
| | rtracklayer |
- +----------------------------------+ | |
| +-------------+
- | | |
| ^
- | +-----------++ |
+-------------+ |
- | | makecdfenv | |
+-----------+ | +----------+--------+
- | +------------+ |
+-------------------------------->| shortread |<-------|---------------+
genomicalignments |
- | ^ | |
+-----------+ | +-------------------+
- | | | |
| ^
- | | | |
| |
- | | | |
| +-------+------+
- | | +-------------------------+
+----------------------------------------->| rsamtools |
- | | | |
| | +--------------+
-+------+-----+ +-------+--+ |
+--+-----+---+ +------------+ +------+--+ ^ ^:
-| hypergraph | | affy |<-----------+ | |
biostrings | | annotate | | biomart | | |:
-+------------+ +----------+ | |
+------------+ +------------+ +---------+ | |:
- ^ ^ ^ ^ | |
^ ^ ^ | |:
- | | | | | |
| | | | |:
- +---+---+ +----------------+ | ++--------+ | |
| +--+----------+-+ +----------+----+ |:
- | graph | | preprocesscore | | | affyio | | |
| | annotationdbi | | genomicranges | |:
- +-------+ +----------------+ | +---------+ | |
| +---------------+ +---------------+ |:
- ^ | | |
| ^ ^ ^ ^ |:
- | | | |
| | | | | |:
- | +--------+------+ | |
+------------------|-----------------+ | | | |:
- | | biocinstaller | | | |
| | | | |:
- | +---------------+ | | |
| +----------------------|---------------+ + |:
- | | | |
| | | +---------+ |:
- | | | |
| | | | |:
- | | | |
+---+---+-+ +-+-----------++ |:
- | | | | |
xvector | | genomeinfodb | |:
- | | | |
+---------+ +--------------+ |:
- | | | |
^ ^ |:
- | | | |
| | |:
- | +----------+ | | |
+---+-----+ | |:
- | | multtest | | | | |
iranges +-------------------------+ |:
- | +----------+ | | |
+-------+-+ |:
- | ^ | | |
^ : |:
- | | +-+--+--+-+
| : |:
- | +--------------+ biobase |
| : |:
- | +---------+
| v |:
- | ^
+--+--------+ +--------------+ |:
- +---------------------------------------------+ |
+----------------->| s4vectors | | biocparallel +---------+:
- | | |
+-----------+ +--------------+<---------+
- | | |
^
- | | |
|
- | | |
+-------------------------------------------------------+
- | | | |
- +--+--+--+---+-+
+----------+
- | biocgenerics
+------------------------------------------------------------------>| snpstats |
+
+------------+
+
| cummerbund |
+
+------------+
+
^
+
|
+
+---+--+
+
| gviz |
+
+------+
+
^
+ +-------+
|
+ | edger |
+------+-----+
+ +-------+
| biovizbase |
+ ^
+------+-----+
+ |
^
+ +---+---+ +------------+ +--------+
|
+ | limma | | hilbertvis | | qvalue |
+----------+--------+
+ +-------+ +------------+ +--------+
| variantannotation |
+ ^
+-------------------+
+ :
^ ^
+ :
| |
+ +------+------+
+------------+----+ +-+---------+
+ |cAAA go.db |
| genomicfeatures | | bsgenome |
+ +-------------+ +--------------+
+-----------------+ +-----------+
+ | altcdfenvs |
^ ^ ^
+ +--------------+
| | |
+ ^ ^ ^
| +--+-------+--+
+ | | |
| | rtracklayer |
+ +----------------------------------+ | |
| +-------------+
+ | | |
| ^
+ | +-----------++ |
+-------------+ |
+ | | makecdfenv | |
+-----------+ | +----------+--------+
+ | +------------+ |
+----------------------->| shortread |<-------|---------------+
genomicalignments |
+ | ^ | |
+-----------+ | +-------------------+
+ | | | |
| ^
+ | | | |
| |
+ | | | |
| +-----------+--+
+ | | +----------------+
+---------------------------------->| rsamtools |
+ | | | | |
| +--------------+
++------+-----+ +-------+--+ | +--+-----+---+
+------------+ +------+--+ ^ ^:
+| hypergraph | | affy |<-----------+ | | biostrings |
| annotate | | biomart | | |:
++------------+ +----------+ | | +------------+
+------------+ +---------+ | |:
+ ^ ^ ^ ^ | | ^
^ ^ | |:
+ | | | | | | |
| | | |:
+ +---+---+ +----------------+ | ++--------+ | | |
+--+----------+-+ +--------+------+ |:
+ | graph | | preprocesscore | | | affyio | | | |
| annotationdbi | | genomicranges | |:
+ +-------+ +----------------+ | +---------+ | | |
+---------------+ +---------------+ |:
+ ^ | | | |
^ ^ ^ ^ |:
+ | | | | |
| | | | |:
+ | +--------+------+ | |
+---------|-----------------+ | | | |:
+ | | biocinstaller | | | | |
| | | |:
+ | +---------------+ | | | |
+----------------------|--------+ | |:
+ | | | | | |
| | |:
+ | | | | +---+---+-+
+-+-----------++ |:
+ | | | | | xvector |
| genomeinfodb | |:
+ | | | | +---------+
+--------------+ |:
+ | | | | ^
^ |:
+ | | | | |
| |:
+ | +----------+ | | | +---+-----+
| |:
+ | | multtest | | | | | iranges
+-------------------------+ |:
+ | +----------+ | | | +-------+-+
|:
+ | ^ | | | ^ :
|:
+ | | +-+--+--+-+ | :
|:
+ | +--------------+ biobase | | :
|:
+ | +---------+ | v
|v
+ | ^
+--+--------+ +---------+----+
+ | | +---------->|
s4vectors | | biocparallel |
+ | | |
+-----------+ +--------------+
+ | | |
^
+ | | |
|
+ | | |
+---------------------------------------------------+
+ | | | |
+ | +-----+--+---+-+
+----------+
+ +------------------------------------------+ biocgenerics
+------------------------------------------------------------------>| snpstats |
+--------------+
+----------+
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