Author: tille Date: 2015-10-31 20:06:48 +0000 (Sat, 31 Oct 2015) New Revision: 20369
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
Log:
Add SummarizedExperiment
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
===================================================================
---
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
2015-10-31 19:59:15 UTC (rev 20368)
+++
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
2015-10-31 20:06:48 UTC (rev 20369)
@@ -31,36 +31,36 @@
| | makecdfenv | |
+-----------+ | +----------+--------+
| +------------+ |
+----------------------->| shortread |<-------|---------------+
genomicalignments |
| ^ | |
+-----------+ | +-------------------+
- | | | |
| ^
- | | | |
| |
- | | | |
| +-----------+--+
- | | +----------------+
+---------------------------------->| rsamtools |
- | | | | |
| +--------------+
-+------+-----+ +-------+--+ | +--+-----+---+
+------------+ +------+--+ ^ ^:
-| hypergraph | | affy |<-----------+ | | biostrings |
| annotate | | biomart | | |:
-+------------+ +----------+ | | +------------+
+------------+ +---------+ | |:
- ^ ^ ^ ^ | | ^
^ ^ | |:
- | | | | | | |
| | | |:
- +---+---+ +----------------+ | ++--------+ | | |
+--+----------+-+ +--------+------+ |:
- | graph | | preprocesscore | | | affyio | | | |
| annotationdbi | | genomicranges | |:
- +-------+ +----------------+ | +---------+ | | |
+---------------+ +---------------+ |:
- ^ | | | |
^ ^ ^ ^ |:
- | | | | |
| | | | |:
- | +--------+------+ | |
+---------|-----------------+ | | | |:
- | | biocinstaller | | | | |
| | | |:
- | +---------------+ | | | |
+----------------------|--------+ | |:
- | | | | | |
| | |:
- | | | | +---+---+-+
+-+-----------++ |:
- | | | | | xvector |
| genomeinfodb | |:
- | | | | +---------+
+--------------+ |:
- | | | | ^
^ |:
- | | | | |
| |:
- | +----------+ | | | +---+-----+
| |:
- | | multtest | | | | | iranges
+-------------------------+ |:
- | +----------+ | | | +-------+-+
|:
- | ^ | | | ^ :
|:
- | | +-+--+--+-+ | :
|:
- | +--------------+ biobase | | :
|:
+ | | | |
| ^ ^
+ | | | |
| | |
+ | | | |
| +-----------+--+ +--------+-------------+
+ | | +----------------+
+---------------------------------->| rsamtools | | summarizedexperiment |
+ | | | | |
| +--------------+ +----------------------+
++------+-----+ +-------+--+ | +--+-----+---+
+------------+ +------+--+ ^ ^: ^
+| hypergraph | | affy |<-----------+ | | biostrings |
| annotate | | biomart | | |: |
++------------+ +----------+ | | +------------+
+------------+ +---------+ | |: |
+ ^ ^ ^ ^ | | ^
^ ^ | |: |
+ | | | | | | |
| | | |: |
+ +---+---+ +----------------+ | ++--------+ | | |
+--+----------+-+ +--------+------+ |: |
+ | graph | | preprocesscore | | | affyio | | | |
| annotationdbi | | genomicranges | |: |
+ +-------+ +----------------+ | +---------+ | | |
+---------------+ +---------------+ |: |
+ ^ | | | |
^ ^ ^ ^ |: |
+ | | | | |
| | | | |: |
+ | +--------+------+ | |
+---------|-----------------+ | | | |: |
+ | | biocinstaller | | | | |
| | | |: |
+ | +---------------+ | | | |
+----------------------|--------+ | |: |
+ | | | | | |
| | |: |
+ | | | | +---+---+-+
+-+-----------++ |: |
+ | | | | | xvector |
| genomeinfodb | |: |
+ | | | | +---------+
+--------------+ |: |
+ | | | | ^
^ |: |
+ | | | | |
| |: |
+ | +----------+ | | | +---+-----+
| |: |
+ | | multtest | | | | | iranges
+-------------------------+ |: |
+ | +----------+ | | | +-------+-+
|: |
+ | ^ | | | ^ :
|: |
+ | | +-+--+--+-+ | :
|: |
+ | +--------------+ biobase
+-----------|-:---------------------------------------------|:-----------+
| +---------+ | v
|v
| ^
+--+--------+ +---------+----+
| | +---------->|
s4vectors | | biocparallel |
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