This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gubbins.
commit be13c99aee93a53b19e17f920afd4b522689a912 Author: Andreas Tille <[email protected]> Date: Thu Nov 19 11:36:11 2015 +0100 Imported Upstream version 1.4.3 --- debian/changelog => CHANGELOG | 0 ChangeLog | 13 ------------- VERSION | 2 +- debian/compat | 1 - debian/control | 17 ----------------- debian/copyright | 31 ------------------------------- debian/rules | 13 ------------- 7 files changed, 1 insertion(+), 76 deletions(-) diff --git a/debian/changelog b/CHANGELOG similarity index 100% rename from debian/changelog rename to CHANGELOG diff --git a/ChangeLog b/ChangeLog deleted file mode 100644 index a677850..0000000 --- a/ChangeLog +++ /dev/null @@ -1,13 +0,0 @@ -2012-11-2 Andrew J. Page <[email protected]> -* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this). -* SNPs are outputted on a per branch basis in tab format. -* The stats are now on a per branch basis rather than cumulatively built up from walking the tree. -* Node labelling in the recombination tab file now consistent with the tree internal node labels - -2012-8-7 Andrew J. Page <[email protected]> -* Cleanup intermediate files by default -* Fix RF distance calculation and comparison - -2012-4-24 Andrew J. Page <[email protected]> -* Initial beta testing version - diff --git a/VERSION b/VERSION index 9df886c..428b770 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -1.4.2 +1.4.3 diff --git a/debian/compat b/debian/compat deleted file mode 100644 index ec63514..0000000 --- a/debian/compat +++ /dev/null @@ -1 +0,0 @@ -9 diff --git a/debian/control b/debian/control deleted file mode 100644 index 2e0036c..0000000 --- a/debian/control +++ /dev/null @@ -1,17 +0,0 @@ -Source: gubbins -Section: misc -Priority: extra -Maintainer: Aidan Delaney <[email protected]> -# fastml, fasttree and raxml are required for the build in order to run the gubbins system tests. -# There are a lot of build dependencies in order to run the system tests. -Build-Depends: fastml2, fasttree, raxml, debhelper (>= 8.0.0), autotools-dev, python-setuptools, zlib1g-dev, check, python-biopython, python-reportlab, python-nose, pkg-config -Standards-Version: 3.9.4 -Vcs-Git: https://github.com/andrewjpage/gubbins.git -Vcs-Browser: https://github.com/andrewjpage/gubbins - -Package: gubbins -Architecture: amd64 -Recommends: raxml -Depends: fastml2, fasttree, python-biopython, python-reportlab, python-nose, ${shlibs:Depends}, ${misc:Depends} -Description: Phylogenetic analysis of genome sequences - Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences. diff --git a/debian/copyright b/debian/copyright deleted file mode 100644 index 9ad8745..0000000 --- a/debian/copyright +++ /dev/null @@ -1,31 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: gubbins -Source: https://github.com/sanger-pathogens/gubbins - -Files: * -Copyright: 2012-2014 Nicholas Croucher <[email protected]> - 2012-2014 Aidan Delaney <[email protected]> - 2012-2014 Simon Harris <[email protected]> - 2012-2014 Andrew J. Page <[email protected]> - -License: GPL-2.0+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/> - . - On Debian systems, the complete text of the GNU General - Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". - -# Please also look if there are files or directories which have a -# different copyright/license attached and list them here. -# Please avoid to pick license terms that are more restrictive than the -# packaged work, as it may make Debian's contributions unacceptable upstream. diff --git a/debian/rules b/debian/rules deleted file mode 100755 index 312e24d..0000000 --- a/debian/rules +++ /dev/null @@ -1,13 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- -# Sample debian/rules that uses debhelper. -# This file was originally written by Joey Hess and Craig Small. -# As a special exception, when this file is copied by dh-make into a -# dh-make output file, you may use that output file without restriction. -# This special exception was added by Craig Small in version 0.37 of dh-make. - -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -%: - dh $@ --with autotools-dev -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gubbins.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
