This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gubbins.
commit f9b56da52dcf20dcb73dfc9bc9b664b02c37f8f7 Author: Andreas Tille <[email protected]> Date: Thu Nov 19 11:39:01 2015 +0100 Re-add files that were deleted when upstream deleted their debian/ dir --- debian/changelog | 256 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ debian/compat | 1 + 2 files changed, 257 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..42a5b72 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,256 @@ +gubbins (1.4.2-1) UNRELEASED; urgency=medium + + * Initial Debian release (Closes: #764232) + + -- Andreas Tille <[email protected]> Thu, 19 Nov 2015 10:45:48 +0100 + +gubbins (1.3.4~trusty1) trusty; urgency=low + + * Identify blocks at end of genome + + -- Andrew Page <[email protected]> Mon, 18 Apr 2015 14:51:00 +0000 + +gubbins (1.3.3~trusty1) trusty; urgency=low + + * Max window size arg bug + + -- Andrew Page <[email protected]> Thu, 16 Apr 2015 16:09:00 +0000 + +gubbins (1.3.2~trusty1) trusty; urgency=low + + * pass in self to window size check + + -- Andrew Page <[email protected]> Thu, 16 Apr 2015 16:00:00 +0000 + +gubbins (1.3.1~trusty1) trusty; urgency=low + + * Calculate bases used for clonal frame + + -- Andrew Page <[email protected]> Thu, 16 Apr 2015 15:00:00 +0000 + +gubbins (1.3.0~trusty1) trusty; urgency=low + + * Apply filtering to leaf nodes + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 14:17:00 +0000 + +gubbins (1.2.5~trusty1) trusty; urgency=low + + * Block out SNPs from downstream recombinations + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 14:17:00 +0000 + +gubbins (1.2.4~trusty1) trusty; urgency=low + + * Python verion number in script + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 14:17:00 +0000 + + +gubbins (1.2.3~trusty1) trusty; urgency=low + + * Eggs werent included in deb + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 14:17:00 +0000 + + +gubbins (1.2.2~trusty1) trusty; urgency=low + + * Last sequence wasnt in array + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 14:17:00 +0000 + +gubbins (1.2.1~trusty1) trusty; urgency=low + + * Update VCF and EMBL output formats + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 11:36:00 +0000 + +gubbins (1.2.0~trusty1) trusty; urgency=low + + * Dont fill in parent bases with gaps from children + + -- Andrew Page <[email protected]> Mon, 30 Mar 2015 10:16:00 +0000 + +gubbins (1.1.2~trusty1) trusty; urgency=low + + * Fix GFF formatting and C warnings + + -- Andrew Page <[email protected]> Fri, 23 Jan 2015 16:02:00 +0000 + +gubbins (1.1.1~trusty1) trusty; urgency=low + + * Message to tell user theres a problem with outgroups not a clade + + -- Andrew Page <[email protected]> Fri, 23 Jan 2015 16:02:00 +0000 + +gubbins (1.1.0~trusty1) trusty; urgency=low + + * Allow for multiple outgroups + + -- Andrew Page <[email protected]> Fri, 23 Jan 2015 15:05:00 +0000 + +gubbins (1.0.12~trusty1) trusty; urgency=low + + * Remove internal labels from final tree + + -- Andrew Page <[email protected]> Tue, 20 Jan 2015 09:03:00 +0000 + +gubbins (1.0.11~trusty1) trusty; urgency=low + + * Test inputs contain variation + + -- Andrew Page <[email protected]> Mon, 19 Jan 2015 09:01:00 +0000 + +gubbins (1.0.10~trusty1) trusty; urgency=low + + * Upload failed on ubuntu + + -- Andrew Page <[email protected]> Mon, 19 Jan 2015 09:01:00 +0000 + +gubbins (1.0.9~trusty1) trusty; urgency=low + + * Remove cpu info and manually look for the flag + + -- Andrew Page <[email protected]> Tue, 6 Jan 2015 14:09:00 +0000 + +gubbins (1.0.8~trusty1) trusty; urgency=low + + * Limit the cpu info lookup to get around bug in ubuntu build + + -- Andrew Page <[email protected]> Mon, 8 Dec 2014 12:58:00 +0000 + +gubbins (1.0.7~trusty1) trusty; urgency=low + + * Update rho/theta calculation to blocks/snps outside recombinations + + -- Andrew Page <[email protected]> Mon, 8 Dec 2014 12:58:00 +0000 + +gubbins (1.0.6~trusty1) trusty; urgency=low + + * Drawer allow for variation tag + + -- Andrew Page <[email protected]> Wed, 3 Dec 2014 11:32:00 +0000 + +gubbins (1.0.5~trusty1) trusty; urgency=low + + * Fasttree executables with upper and lower case + + -- Andrew Page <[email protected]> Wed, 19 Nov 2014 14:16:00 +0000 + +gubbins (1.0.4~trusty1) trusty; urgency=low + + * Warning when number of threads changed for raxml + + -- Andrew Page <[email protected]> Fri, 14 Nov 2014 14:16:00 +0000 + +gubbins (1.0.3~trusty1) trusty; urgency=low + + * Dont use multiple threads for raxml if not requested + + -- Andrew Page <[email protected]> Fri, 14 Nov 2014 14:16:00 +0000 + +gubbins (1.0.2~trusty1) trusty; urgency=low + + * Allow for more convergence methods + + -- Andrew Page <[email protected]> Tue, 14 Oct 2014 14:16:00 +0000 + +gubbins (1.0.1~trusty1) trusty; urgency=low + + * Fixed unstable python test + + -- Andrew Page <[email protected]> Tue, 14 Oct 2014 14:16:00 +0000 + +gubbins (1.0~trusty1) trusty; urgency=low + + * Strict convergence option + + -- Andrew Page <[email protected]> Tue, 14 Oct 2014 14:16:00 +0000 + +gubbins (0.6~trusty1) trusty; urgency=low + + * Gubbins drawer can now use .embl file with recombination regions + + -- Andrew Page <[email protected]> Tue, 9 Sep 2014 13:03:00 +0000 + +gubbins (0.5~trusty1) trusty; urgency=low + + * Thread support for RAXML + + -- Andrew Page <[email protected]> Tue, 9 Sep 2014 09:45:00 +0000 + +gubbins (0.4.1~trusty1) trusty; urgency=low + + * Check for FastTree lowercase executable + + -- Andrew Page <[email protected]> Mon, 8 Sep 2014 10:32:00 +0000 + +gubbins (0.4~trusty1) trusty; urgency=low + + * Rename output files for pairwise comparison + + -- Andrew Page <[email protected]> Fri, 5 Sep 2014 10:26:00 +0000 + +gubbins (0.3~trusty1) trusty; urgency=low + + * Changes statistics file output + + -- Andrew Page <[email protected]> Thu, 4 Sep 2014 17:07:00 +0000 + +gubbins (0.2~trusty1) trusty; urgency=low + + * Rename final output files + + -- Andrew Page <[email protected]> Mon, 1 Sep 2014 16:44:00 +0000 + +gubbins (0.1.11~trusty1) trusty; urgency=low + + * Python remove internal node names if passed in as a starting tree + + -- Andrew Page <[email protected]> Fri, 22 Aug 2014 16:44:00 +0000 + +gubbins (0.1.10~trusty1) trusty; urgency=low + + * Python print list of excluded sequences to STDOUT by default + + -- Andrew Page <[email protected]> Fri, 22 Aug 2014 14:44:00 +0000 + +gubbins (0.1.9~trusty1) trusty; urgency=low + + * Python prints error messages for invalid sequence files and sends exit code 1 + + -- Andrew Page <[email protected]> Fri, 22 Aug 2014 10:37:00 +0000 + +gubbins (0.1.8~trusty1) trusty; urgency=low + + * Python fastml exec fix + * Python check sequence names in tree + + -- Andrew Page <[email protected]> Thu, 15 Aug 2014 16:32:00 +0000 + +gubbins (0.1.7~trusty2) trusty; urgency=low + + * Package for trusty + * Move blocks further inwards + + -- Andrew Page <[email protected]> Thu, 14 Aug 2014 09:56:00 +0000 + +gubbins (0.1.6) saucy; urgency=low + + * Changed build depends + + -- Aidan Delaney (Packaging Key) <[email protected]> Wed, 26 Jun 2014 14:46:07 +0000 + +gubbins (0.1.5) saucy; urgency=low + + * Updated build system and removed some tests + + -- Aidan Delaney (Packaging Key) <[email protected]> Wed, 25 Jun 2014 14:46:07 +0000 + +gubbins (0.1.4) saucy; urgency=low + + * Updated Debian packages such that the build version is taken from Automake. + + -- Aidan Delaney (Packaging Key) <[email protected]> Mon, 31 Mar 2014 14:46:07 +0000 + diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gubbins.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
