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commit 61fb99baa9e6e39630cbe06ca6449b80679a91b4 Author: Andreas Tille <[email protected]> Date: Wed May 11 15:07:12 2016 +0000 Inject r-bioc-annotationhub --- debian/changelog | 7 ++++ debian/compat | 1 + debian/control | 33 ++++++++++++++++ debian/copyright | 106 +++++++++++++++++++++++++++++++++++++++++++++++++++ debian/rules | 4 ++ debian/source/format | 1 + debian/watch | 3 ++ 7 files changed, 155 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..ac9f480 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,7 @@ +r-bioc-annotationhub (2.4.0-1) UNRELEASED; urgency=low + + * Initial release (closes: #???) + TODO: + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-interactivedisplaybase/trunk/ + + -- Andreas Tille <[email protected]> Wed, 11 May 2016 15:29:00 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..6f58422 --- /dev/null +++ b/debian/control @@ -0,0 +1,33 @@ +Source: r-bioc-annotationhub +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Testsuite: autopkgtest +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-bioc-annotationdbi, + r-bioc-biocinstaller, + r-cran-httr +Standards-Version: 3.9.8 +Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-annotationhub/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-annotationhub/trunk/ +Homepage: http://bioconductor.org/packages/release/bioc/html/AnnotationHub.html + +Package: r-bioc-annotationhub +Architecture: all +Depends: ${R:Depends}, + ${misc:Depends}, + r-bioc-annotationdbi, + r-bioc-biocinstaller, + r-cran-httr +Description: GNU R client to access AnnotationHub resources + This package provides a client for the Bioconductor AnnotationHub web + resource. The AnnotationHub web resource provides a central location + where genomic files (e.g., VCF, bed, wig) and other resources from + standard locations (e.g., UCSC, Ensembl) can be discovered. The resource + includes metadata about each resource, e.g., a textual description, + tags, and date of modification. The client creates and manages a local + cache of files retrieved by the user, helping with quick and + reproducible access. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..772ff1f --- /dev/null +++ b/debian/copyright @@ -0,0 +1,106 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: AnnotationHub +Upstream-Contact: Bioconductor Package Maintainer <[email protected]> +Source: http://bioconductor.org/packages/release/bioc/html/AnnotationHub.html + +Files: * +Copyright: 2006-2016 Martin Morgan, Marc Carlson, Dan Tenenbaum, Sonali Arora +License: Artistic-2.0 + +Files: debian/* +Copyright: 2013-2014 Andreas Tille <[email protected]> +License: Artistic-2.0 + +License: Artistic-2.0 + The "Artistic License" + . + Preamble + . + 1. You may make and give away verbatim copies of the source form of the + Standard Version of this Package without restriction, provided that + you duplicate all of the original copyright notices and associated + disclaimers. + . + 2. You may apply bug fixes, portability fixes and other modifications + derived from the Public Domain or from the Copyright Holder. A + Package modified in such a way shall still be considered the Standard + Version. + . + 3. You may otherwise modify your copy of this Package in any way, + provided that you insert a prominent notice in each changed file stating + how and when you changed that file, and provided that you do at least + ONE of the following: + . + a) place your modifications in the Public Domain or otherwise make them + Freely Available, such as by posting said modifications to Usenet or + an equivalent medium, or placing the modifications on a major archive + site such as uunet.uu.net, or by allowing the Copyright Holder to include + your modifications in the Standard Version of the Package. + . + b) use the modified Package only within your corporation or organization. + . + c) rename any non-standard executables so the names do not conflict + with standard executables, which must also be provided, and provide + a separate manual page for each non-standard executable that clearly + documents how it differs from the Standard Version. + . + d) make other distribution arrangements with the Copyright Holder. + . + 4. 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However, you may + distribute this Package in aggregate with other (possibly commercial) + programs as part of a larger (possibly commercial) software distribution + provided that you do not advertise this Package as a product of your + own. You may embed this Package's interpreter within an executable of + yours (by linking); this shall be construed as a mere form of + aggregation, provided that the complete Standard Version of the + interpreter is so embedded. + . + 6. The scripts and library files supplied as input to or produced as + output from the programs of this Package do not automatically fall under + the copyright of this Package, but belong to whoever generated them, and + may be sold commercially, and may be aggregated with this Package. If + such scripts or library files are aggregated with this Package via the + so-called "undump" or "unexec" methods of producing a binary executable + image, then distribution of such an image shall neither be construed as + a distribution of this Package nor shall it fall under the restrictions + of Paragraphs 3 and 4, provided that you do not represent such an + executable image as a Standard Version of this Package. + . + 7. C subroutines (or comparably compiled subroutines in other + languages) supplied by you and linked into this Package in order to + emulate subroutines and variables of the language defined by this + Package shall not be considered part of this Package, but are the + equivalent of input as in Paragraph 6, provided these subroutines do + not change the language in any way that would cause it to fail the + regression tests for the language. + . + 8. Aggregation of this Package with a commercial distribution is always + permitted provided that the use of this Package is embedded; that is, + when no overt attempt is made to make this Package's interfaces visible + to the end user of the commercial distribution. Such use shall not be + construed as a distribution of this Package. + . + 9. The name of the Copyright Holder may not be used to endorse or promote + products derived from this software without specific prior written permission. + . + 10. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR + IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED + WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..aeb12b3 --- /dev/null +++ b/debian/rules @@ -0,0 +1,4 @@ +#!/usr/bin/make -f + +debRreposname=bioc +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..2362689 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 +opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \ + http://www.bioconductor.org/packages/release/bioc/html/AnnotationHub.html .*/AnnotationHub_([\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-annotationhub.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
