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commit 6bb1ea263a85cb3070ca1f8b00fbd8918d4936b5 Author: Andreas Tille <[email protected]> Date: Wed May 13 13:24:38 2015 +0000 Add missing dependency for r-cran-apmswapp --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 42 ++++++++++++++++++++++++++++++++++++++++++ debian/copyright | 27 +++++++++++++++++++++++++++ debian/rules | 4 ++++ debian/source/format | 1 + debian/watch | 3 +++ 7 files changed, 83 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..82ed36f --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-bioc-multtest (2.24.0-1) UNRELEASED; urgency=medium + + * Initial release (closes: #???). + + -- Andreas Tille <[email protected]> Wed, 13 May 2015 15:20:31 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..05b05b4 --- /dev/null +++ b/debian/control @@ -0,0 +1,42 @@ +Source: r-bioc-multtest +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-bioc-biobase, + r-cran-survival, + r-cran-mass +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-multtest/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-multtest/trunk/ +Homepage: http://bioconductor.org/packages/release/bioc/html/multtest.html + +Package: r-bioc-multtest +Architecture: any +Depends: ${R:Depends}, + ${misc:Depends}, + ${shlibs:Depends}, + r-bioc-biobase, + r-cran-survival, + r-cran-mass +Description: Bioconductor resampling-based multiple hypothesis testing + Non-parametric bootstrap and permutation resampling-based multiple + testing procedures (including empirical Bayes methods) for controlling + the family-wise error rate (FWER), generalized family-wise error rate + (gFWER), tail probability of the proportion of false positives (TPPFP), + and false discovery rate (FDR). Several choices of bootstrap-based null + distribution are implemented (centered, centered and scaled, + quantile-transformed). Single-step and step-wise methods are available. + Tests based on a variety of t- and F-statistics (including t-statistics + based on regression parameters from linear and survival models as well + as those based on correlation parameters) are included. When probing + hypotheses with t-statistics, users may also select a potentially faster + null distribution which is multivariate normal with mean zero and + variance covariance matrix derived from the vector influence function. + Results are reported in terms of adjusted p-values, confidence regions + and test statistic cutoffs. The procedures are directly applicable to + identifying differentially expressed genes in DNA microarray + experiments. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..ba2be1e --- /dev/null +++ b/debian/copyright @@ -0,0 +1,27 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: multtest +Upstream-Contact: Katherine S. Pollard <[email protected]> +Source: http://bioconductor.org/packages/release/bioc/html/multtest.html + +Files: * +Copyright: © 2006-2015 Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit +License: LGPL-3+ + + +Files: debian/* +Copyright: 2015 Andreas Tille <[email protected]> +License: LGPL-3+ + +License: LGPL-3+ + This program is free software: you can redistribute it and/or modify it + under the terms of the GNU Lesser General Public License as published by + the Free Software Foundation, either version 3 of the License, or (at + your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Lesser General Public License for more details. + . + On Debian systems, the complete text of the GNU Lesser General Public + License version 3 can be found in ‘/usr/share/common-licenses/LGPL-3’. diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..aeb12b3 --- /dev/null +++ b/debian/rules @@ -0,0 +1,4 @@ +#!/usr/bin/make -f + +debRreposname=bioc +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..ac012c7 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 +opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \ + http://www.bioconductor.org/packages/release/bioc/html/multtest.html .*/multtest_([\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-multtest.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
