This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository garli.
commit ad1383cc2a6be161d3aa51b54cb54a7c4a4de9b9 Author: Andreas Tille <[email protected]> Date: Fri Oct 23 09:59:03 2015 +0000 Inject garli, but needs http://sourceforge.net/projects/ncl/ packaged first --- debian/changelog | 6 ++++++ debian/compat | 1 + debian/control | 24 ++++++++++++++++++++++++ debian/copyright | 12 ++++++++++++ debian/rules | 19 +++++++++++++++++++ debian/source/format | 1 + debian/watch | 3 +++ 7 files changed, 66 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..d7bffb2 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,6 @@ +garli (2.1-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + TODO: Needs http://sourceforge.net/projects/ncl/ + + -- Andreas Tille <[email protected]> Fri, 23 Oct 2015 08:41:45 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..f3d4dd4 --- /dev/null +++ b/debian/control @@ -0,0 +1,24 @@ +Source: garli +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 9), + dh-autoreconf +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/garli/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/garle/trunk/ +Homepage: https://github.com/Ashod/garli + +Package: garli +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: phylogenetic analysis of molecular sequence data using maximum-likelihood + GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for + inferring phylogenetic trees. Using an approach similar to a classical + genetic algorithm, it rapidly searches the space of evolutionary trees + and model parameters to find the solution maximizing the likelihood + score. It implements nucleotide, amino acid and codon-based models of + sequence evolution, and runs on all platforms. The latest version adds + support for partitioned models and morphology-like datatypes. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..6eb7896 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,12 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: garli +Upstream-Contact: [email protected] +Source: https://github.com/Ashod/garli/releases + +Files: * +Copyright: © 20xx-20yy <upstream> +License: <license> + +Files: debian/* +Copyright: © 2014 maintainername <[email protected]> +License: <license> diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..b835e3b --- /dev/null +++ b/debian/rules @@ -0,0 +1,19 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# alternatively to manually set those variables, you can +# include /usr/share/dpkg/default.mk +# and use what is set there. + +%: + dh $@ --with autoreconf diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..ab72a3c --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 + +https://github.com/Ashod/garli/releases .*/archive/(\d[\d.-]+)-release\.(?:tar(?:\.gz|\.bz2)?|tgz) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/garli.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
