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commit 741ad8d713cf30575b13dad91f3a0393068c2000 Author: Andreas Tille <[email protected]> Date: Fri Jun 3 15:21:55 2016 +0000 Add manpage and upload --- debian/changelog | 6 +++--- debian/garli.1 | 42 ++++++++++++++++++++++++++++++++++++++++++ debian/manpages | 1 + debian/rules | 2 +- 4 files changed, 47 insertions(+), 4 deletions(-) diff --git a/debian/changelog b/debian/changelog index 6d8c0c8..efd35fd 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,5 +1,5 @@ -garli (2.1-1) UNRELEASED; urgency=low +garli (2.1-1) unstable; urgency=low - * Initial release (Closes: #<bug>) + * Initial release (Closes: #826236) - -- Andreas Tille <[email protected]> Fri, 23 Oct 2015 08:41:45 +0200 + -- Andreas Tille <[email protected]> Fri, 03 Jun 2016 16:57:40 +0200 diff --git a/debian/garli.1 b/debian/garli.1 new file mode 100644 index 0000000..93c9641 --- /dev/null +++ b/debian/garli.1 @@ -0,0 +1,42 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. +.TH GARLI "1" "June 2016" "garli 2.1" "User Commands" +.SH NAME +garli \- phylogenetic analysis of molecular sequence data using maximum-likelihood +.SH SYNOPSIS +.B garli +[\fI\,OPTION\/\fR] [\fI\,config filename\/\fR] +.SH DESCRIPTION +GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for +inferring phylogenetic trees. Using an approach similar to a classical +genetic algorithm, it rapidly searches the space of evolutionary trees +and model parameters to find the solution maximizing the likelihood +score. It implements nucleotide, amino acid and codon-based models of +sequence evolution, and runs on all platforms. The latest version adds +support for partitioned models and morphology-like datatypes. +.SH OPTIONS +.TP +\fB\-i\fR, \fB\-\-interactive\fR +interactive mode (allow and/or expect user feedback) +.TP +\fB\-b\fR, \fB\-\-batch\fR +batch mode (do not expect user input) +(batch is the default for the version you are running) +.TP +\fB\-v\fR, \fB\-\-version\fR +print version information and exit +.TP +\fB\-h\fR, \fB\-\-help\fR +print this help and exit +.TP +\fB\-t\fR +run internal tests (requires dataset and config file) +.TP +\fB\-V\fR +validate: load config file and data, validate config file, data, starting trees +and constraint files, print required memory and selected model, then exit +.P +NOTE: If no config filename is passed on the command line the program +will look in the current directory for a file named "garli.conf" +.PP +.SH AUTHOR +This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. diff --git a/debian/manpages b/debian/manpages new file mode 100644 index 0000000..0f65186 --- /dev/null +++ b/debian/manpages @@ -0,0 +1 @@ +debian/*.1 diff --git a/debian/rules b/debian/rules index 2d19585..c0d6c8b 100755 --- a/debian/rules +++ b/debian/rules @@ -1,6 +1,6 @@ #!/usr/bin/make -f -DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +export DEB_BUILD_MAINT_OPTIONS = hardening=+all %: dh $@ --with autoreconf -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/garli.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
