Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
d3b3c575 by Andreas Tille at 2020-03-23T01:45:14+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
+Last-Update: Mon, 23 Mar 2020 01:42:44 +0000
 
  Source                        | Vote   | Tasks                                
      |                                 Tags                                 
 
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
+Last-Update: Mon, 23 Mar 2020 01:42:45 +0000
 
  source                        |             version             |        
upstream_version         |                      uploaders                       
                     | Last uploader        |     Last uploaded      
 
-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -62,8 +62,8 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
 (57 rows)
 
 
- source                        |   id   | severity  |                          
                                                                 title          
                                                                                
 
--------------------------------+--------+-----------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+ source                        |   id   | severity  |                          
                                                                     title      
                                                                                
         
+-------------------------------+--------+-----------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  abyss                         | 920282 | important | abyss fails to build on 
hurd - googletest EXPECT_DEATH
  amide                         | 901677 | normal    | amide: Window is too 
wide and not resizable
  arb                           | 916406 | important | libarb-dev: Missing 
symbols in static libraries
@@ -81,9 +81,12 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
  biojava4-live                 | 843712 | normal    | biojava4-live: FTBFS 
(failing tests)
  biojava-live                  | 659824 | minor     | biojava-live: New 
version available
  biomaj3                       | 950914 | minor     | python3-biomaj3: Depends 
on python-influxdb wich ftbs, patch to remove dependency
+ bioperl-run                   | 954511 | serious   | bioperl-run: FTBFS: 
dh_auto_test: error: perl Build test --verbose 1 returned exit code 255
  bwa                           | 942447 | normal    | Build bwa on ppc64el
  camp                          | 900181 | normal    | camp: FTBFS on 32bit big 
endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 
15)).to<unsigned long>() == 20 has failed
  clonalorigin                  | 884475 | wishlist  | clonalorigin: FTBFS on 
alpha: tests time out
+ cwltool                       | 954496 | serious   | cwltool: FTBFS: 
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 
3.8" returned exit code 13
+ cyvcf2                        | 954603 | serious   | cyvcf2: FTBFS: 
dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 3.8" 
returned exit code 13
  dawg                          | 903886 | important | dawg: Test suite fails
  dcmtk                         | 637687 | wishlist  | libdcmtk2-dev: Dcmtk 
headers cause compile failure
  dcmtk                         | 675448 | important | dcmtk: dcmdjpeg does not 
set (0028, 2114) LossyImageCompressionMethod when decompressing lossy 
compressed DICOM file
@@ -211,6 +214,7 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
  pynast                        | 937488 | normal    | pynast: Python2 removal 
in sid/bullseye
  pynast                        | 948081 | serious   | pynast build depends on 
and recommends the removed blast2 transitional package
  pynn                          | 813821 | serious   | pynn: FTBFS: TypeError: 
'float' object cannot be interpreted as an index
+ pyqi                          | 954500 | serious   | pyqi: FTBFS: 
dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
  python-biom-format            | 820060 | normal    | python-biom-format: 
broken on big-endian architectures
  python-biom-format            | 950929 | normal    | python-biom-format: 
FTBFS with pandas 1.0: test failures
  python-cogent                 | 950474 | important | python-cogent FTBFS on 
armel and i386: test failures
@@ -222,6 +226,7 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
  python-pysam                  | 938092 | normal    | python-pysam: Python2 
removal in sid/bullseye
  python-ruffus                 | 841073 | wishlist  | python-ruffus: Needs 18 
GB of RAM to build
  python-tinyalign              | 952603 | normal    | python-tinyalign: 
license of buildwheels.sh is CC0
+ q2cli                         | 954601 | serious   | q2cli: FTBFS: 
dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s 
custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= 
nosetests3" returned exit code 13
  q2-demux                      | 950933 | normal    | q2-demux: FTBFS with 
pandas 1.0: test failures
  q2templates                   | 950931 | normal    | q2templates: FTBFS with 
pandas 1.0: test failures
  q2-types                      | 950932 | normal    | q2-types: FTBFS with 
pandas 1.0: test failures
@@ -238,6 +243,8 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
  sambamba                      | 948919 | serious   | sambamba FTBFS: 
undefined reference to 'cram_to_bam'
  seqan2                        | 892222 | normal    | seqan2: FTBFS on hppa: 
app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
  seqan2                        | 917851 | important | seqan2 2.4.0+dfsg-9: 
FTBFS, alignment problem
+ seqan3                        | 954589 | serious   | seqan3: FTBFS: 
two_dimensional_matrix_test.cpp:43:15: error: invalid type ‘__vector(1) int’ as 
initializer for a vector of type ‘const __vector(1) int’
+ sight                         | 954711 | wishlist  | FTBFS with Boost 1.71
  simka                         | 954273 | important | simka: arm64 autopkgtest 
time out
  simpleitk                     | 949355 | serious   | simpleitk FTBFS: test 
failures
  skesa                         | 952627 | serious   | skesa: FTBFS: ld: 
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: 
undefined reference to `vdb_mbedtls_entropy_init'
@@ -265,5 +272,5 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open 
file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading 
dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(201 rows)
+(208 rows)
 



View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3b3c57523f6d1fca4ab6d7dfcef002a84f939d4

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3b3c57523f6d1fca4ab6d7dfcef002a84f939d4
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