Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
fa7b25bb by Andreas Tille at 2020-03-15T01:44:18+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
+Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                
      |                                 Tags                                 
 
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
+Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
 
  source                        |             version             |        
upstream_version         |                       uploaders                      
                       | Last uploader        |     Last uploaded      
 
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -151,7 +151,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
  dicom3tools                   | 815628 | normal    | dicom3tools: dcintro man 
page missing
  dicomscope                    | 927089 | normal    | dicomscope-doc: error 
merging doc-base files: format pdf already defined
  discosnp                      | 942404 | serious   | discosnp: flaky 
autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or 
directory
- drmaa                         | 953832 | serious   | drmaa: autopkgtest 
failure: RuntimeError: Could not find drmaa library
+ drmaa                         | 953832 | serious   | cannot allocate memory 
in static TLS block
  ea-utils                      | 846858 | normal    | src:ea-utils: New 
version available
  ea-utils                      | 862118 | wishlist  | ea-utils: New upstream 
version available
  elastix                       | 909280 | wishlist  | elastix: New upstream 
available
@@ -224,6 +224,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
  opensurgsim                   | 912110 | important | opensurgsim FTBFS: test 
failures
  opensurgsim                   | 914338 | normal    | opensurgsim ftbfs with 
ld --as-needed
  orthanc                       | 829380 | wishlist  | orthanc: please provide 
orthanc_upgrade script
+ orthanc                       | 953884 | wishlist  | FTBFS with Boost 1.71
  orthanc-postgresql            | 829383 | wishlist  | orthanc-postgresql: 
please provide backup script
  orthanc-webviewer             | 828949 | minor     | orthanc-webviewer: 
"better" suggestion for cache location
  paleomix                      | 933750 | normal    | paleomix: Port to 
Python3 needed
@@ -247,7 +248,6 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
  psychopy                      | 829424 | normal    | psychopy: ioHub uses 
inappropriate PID file location
  psychopy                      | 953052 | important | psychopy: python2 
dependencies
  psychopy                      | 953053 | important | psychopy: missing 
python3 dependencies
- psychopy                      | 953846 | serious   | psychopy: ships 
/usr/lib/python3/dist-packages/packaging/__init__.py
  pynast                        | 937488 | normal    | pynast: Python2 removal 
in sid/bullseye
  pynast                        | 948081 | serious   | pynast build depends on 
and recommends the removed blast2 transitional package
  python-biom-format            | 820060 | normal    | python-biom-format: 
broken on big-endian architectures
@@ -269,6 +269,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
  qiime                         | 950842 | serious   | autopkg tests fail with 
Python 3.8
  qrisk2                        | 912118 | normal    | qrisk2: 2017 upstream 
release
  qrisk2                        | 912119 | normal    | qrisk2: please provide 
qrisk3
+ ragout                        | 953904 | serious   | ragout: autopkgtest 
failure: "sibelia" is not installed.
  rapmap                        | 909766 | important | Use Debian packaged 
spdlog instead of code copy of old version
  relion                        | 952003 | serious   | relion: FTBFS: 
src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute 
error: MPI_Errhandler_set was removed in MPI-3.0.  Use MPI_Comm_set_errhandler 
instead.
  salmon                        | 952102 | serious   | salmon: FTBFS: 
SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no 
member named ‘maxSlack’
@@ -295,10 +296,11 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
  tree-puzzle                   | 890790 | minor     | tree-puzzle: Please 
provide autopkgtest
  tree-puzzle                   | 951984 | serious   | tree-puzzle: FTBFS: 
mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in 
MPI-3.0.  Use MPI_Get_address instead."
  treeviewx                     | 846481 | minor     | src:treeviewx: Please 
remove statically linked code copy of libncl
+ uc-echo                       | 953898 | serious   | uc-echo: arm64 
autopkgtest failure: NeighborJoinParam [...] failed to execute.
  unanimity                     | 938751 | serious   | unanimity: Python2 
removal in sid/bullseye
  unanimity                     | 939506 | serious   | unanimity ftbfs in 
unstable
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open 
file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading 
dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(194 rows)
+(196 rows)
 



View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa7b25bb4f2d5a6b1e32a2364f485a5d442d9741

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa7b25bb4f2d5a6b1e32a2364f485a5d442d9741
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