Andreas Tille pushed to branch master at Debian Med / pique
Commits: 0959b6ae by Andreas Tille at 2020-07-20T11:59:43+02:00 Fix description - - - - - 617ebe65 by Andreas Tille at 2020-07-20T12:01:08+02:00 routine-update: Standards-Version: 4.5.0 - - - - - dd0c3cc6 by Andreas Tille at 2020-07-20T12:01:08+02:00 routine-update: debhelper-compat 13 - - - - - f1ce6287 by Andreas Tille at 2020-07-20T12:01:15+02:00 routine-update: Add salsa-ci file - - - - - 18ed8318 by Andreas Tille at 2020-07-20T12:01:15+02:00 routine-update: Rules-Requires-Root: no - - - - - f220e8aa by Andreas Tille at 2020-07-20T12:01:20+02:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-file-is-missing See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 35f20be9 by Andreas Tille at 2020-07-20T12:04:24+02:00 Cleanup changelog from automated changes - - - - - 5 changed files: - − debian/README.test - − debian/compat - debian/control - + debian/salsa-ci.yml - + debian/upstream/metadata Changes: ===================================== debian/README.test deleted ===================================== @@ -1,8 +0,0 @@ -Notes on how this package can be tested. -──────────────────────────────────────── - -This package can be tested by running the provided test: - - sh run-unit-test - -in order to confirm its integrity. ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -12 ===================================== debian/control ===================================== @@ -3,11 +3,12 @@ Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 12~) -Standards-Version: 4.3.0 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pique Vcs-Git: https://salsa.debian.org/med-team/pique.git Homepage: https://github.com/tony-travis/PIQUE/ +Rules-Requires-Root: no Package: pique Architecture: all @@ -22,5 +23,20 @@ Depends: ${perl:Depends}, libfile-slurp-perl, r-cran-forecast, r-cran-uroot -Description: parallel identification of QTL's using EMMAX - FIXME: parallel identification of QTL's using EMMAX +Description: software pipeline for performing genome wide association studies + PIQUE is a software pipeline for performing genome wide association + studies (GWAS). The main function of PIQUE is to provide ‘convenience’ + wrappers that allow users to perform GWAS using the popular program + EMMAX (Kang et al., 2010) without the need to be familiar with all of + the software tools used to generate the required EMMAX input files. + PIQUE will also perform a number of of quality control steps prior to + running EMMAX, ensuring that the various input data files are in the + correct format. PIQUE proceeds in two main stages although there are + multiple entry and exit points from which the pipeline can be run. The + first stage consists of running the “emmax-input” program, which can + read genotype and phenotype information in several different formats and + generates all the necessary input files required to run EMMAX. The + second step in the pipeline uses the “emmax-run” program to actually run + EMMAX using the files generated by “emmax-input” (or pre-existing + user-supplied input files) to perform the GWAS and output the analysis + summary files. ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -0,0 +1,5 @@ +--- +Bug-Database: https://github.com/tony-travis/PIQUE/issues +Bug-Submit: https://github.com/tony-travis/PIQUE/issues/new +Repository: https://github.com/tony-travis/PIQUE.git +Repository-Browse: https://github.com/tony-travis/PIQUE View it on GitLab: https://salsa.debian.org/med-team/pique/-/compare/0940fe16067106ca60804e77caf873e46e852a86...35f20be9ac31f0a9f1fed03916fc627315610eee -- View it on GitLab: https://salsa.debian.org/med-team/pique/-/compare/0940fe16067106ca60804e77caf873e46e852a86...35f20be9ac31f0a9f1fed03916fc627315610eee You're receiving this email because of your account on salsa.debian.org.
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