Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cf294796 by Andreas Tille at 2020-07-27T13:47:46+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,21 +1,21 @@
-Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
+Last-Update: Mon, 27 Jul 2020 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {imaging,covid-19}
|
- orthanc | 93 | {practice,covid-19,imaging}
|
+ dcmtk | 180 | {imaging,covid-19}
|
+ orthanc | 95 | {practice,covid-19,imaging}
|
orthanc-wsi | 45 |
{his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 37 | {imaging-dev}
|
+ gdcm | 34 | {imaging-dev}
|
htsjdk | 25 | {bio-dev}
|
dicom3tools | 21 | {imaging}
|
- dcm2niix | 20 | {imaging}
|
dicomscope | 20 | {imaging}
|
+ dcm2niix | 18 | {imaging}
|
gnumed-server | 18 | {covid-19,practice}
|
- gdcm | 14 | {covid-19,imaging}
|
+ gdcm | 15 | {covid-19,imaging}
|
ngs-sdk | 14 | {bio-dev}
|
- gdcm | 13 | {imaging-dev}
|
- insighttoolkit4 | 13 | {imaging-dev}
|
- ngs-sdk | 11 | {bio-dev}
|
+ gdcm | 12 | {imaging-dev}
|
+ insighttoolkit4 | 12 | {imaging-dev}
|
+ ngs-sdk | 10 | {bio-dev}
|
adun.app | 9 | {bio}
|
invesalius | 9 | {imaging}
|
melting | 8 | {cloud,bio}
|
@@ -26,22 +26,17 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
jebl2 | 7 | {bio-dev}
|
minc-tools | 7 | {imaging}
|
orthanc-dicomweb | 7 | {covid-19,imaging}
|
- vtk-dicom | 7 | {imaging}
|
bart-view | 6 | {imaging}
|
- biomaj3-cli | 6 | {cloud}
|
fastlink | 6 | {bio,cloud}
|
libminc | 6 | {imaging-dev}
|
librg-utils-perl | 6 | {bio}
|
- obitools | 6 | {bio}
|
openslide | 6 | {imaging}
|
orthanc-mysql | 6 | {imaging}
|
phyutility | 6 | {bio,cloud}
|
- rdp-readseq | 6 | {bio}
|
sibsim4 | 6 | {bio,cloud}
|
sigma-align | 6 | {bio,cloud,bio-phylogeny}
|
- stacks | 6 | {bio}
|
- biomaj3-daemon | 5 | {bio}
|
- dicompyler | 5 | {oncology}
|
+ vtk-dicom | 6 | {imaging}
|
+ biomaj3-cli | 5 | {cloud}
|
ea-utils | 5 | {bio}
|
elastix | 5 | {imaging}
|
king | 5 | {typesetting,imaging}
|
@@ -50,17 +45,20 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
mauve-aligner | 5 | {bio}
|
mipe | 5 | {cloud,bio}
|
neobio | 5 | {cloud,bio}
|
+ obitools | 5 | {bio}
|
orthanc-postgresql | 5 | {imaging}
|
piler | 5 | {bio}
|
plastimatch | 5 | {imaging}
|
pymia | 5 | {imaging-dev}
|
- rdp-alignment | 5 | {bio}
|
+ rdp-readseq | 5 | {bio}
|
spread-phy | 5 | {bio-phylogeny,bio}
|
- transtermhp | 5 | {bio}
|
+ stacks | 5 | {bio}
|
alter-sequence-alignment | 4 | {bio}
|
anfo | 4 | {cloud,bio}
|
+ biomaj3-daemon | 4 | {bio}
|
biosig4c++ | 4 | {physics,imaging}
|
daligner | 4 | {bio,bio-ngs}
|
+ dicompyler | 4 | {oncology}
|
ecopcr | 4 | {bio}
|
embassy-domainatrix | 4 | {cloud,bio}
|
embassy-domalign | 4 | {cloud,bio}
|
@@ -77,6 +75,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
predictprotein | 4 | {bio}
|
proalign | 4 | {bio,bio-phylogeny}
|
probabel | 4 | {bio,cloud}
|
+ rdp-alignment | 4 | {bio}
|
rdp-classifier | 4 | {bio}
|
relion | 4 | {bio}
|
runcircos-gui | 4 | {bio}
|
@@ -85,6 +84,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
scythe | 4 | {bio}
|
squizz | 4 | {bio,cloud}
|
staden | 4 | {bio}
|
+ transtermhp | 4 | {bio}
|
treeview | 4 | {bio,bio-phylogeny}
|
ampliconnoise | 3 | {bio,cloud}
|
beast2-mcmc | 3 | {bio}
|
@@ -97,6 +97,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
edtsurf | 3 | {bio}
|
fastml | 3 | {bio}
|
fsm-lite | 3 | {bio}
|
+ ghmm | 3 | {bio}
|
harvest-tools | 3 | {bio}
|
jmodeltest | 3 | {bio-phylogeny,bio}
|
libpal-java | 3 | {bio-dev}
|
@@ -115,7 +116,6 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
seqmagick | 3 | {bio,covid-19}
|
sga | 3 | {bio}
|
sprai | 3 | {bio}
|
- tnseq-transit | 3 | {bio,covid-19}
|
tracetuner | 3 | {bio}
|
tvc | 3 | {bio}
|
acedb | 2 | {cloud,bio}
|
@@ -134,14 +134,12 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
delly | 2 | {covid-19,bio}
|
estscan | 2 | {bio}
|
getdata | 2 | {bio}
|
- ghmm | 2 | {bio}
|
hinge | 2 | {bio}
|
jellyfish1 | 2 | {bio}
|
lamarc | 2 | {bio}
|
libctapimkt | 2 | {practice}
|
multiqc | 2 | {bio,covid-19}
|
murasaki | 2 | {bio}
|
- ngs-sdk | 2 | {bio-dev}
|
openslide | 2 | {imaging-dev}
|
patman | 2 | {bio}
|
phast | 2 | {bio}
|
@@ -165,6 +163,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
suitename | 2 | {bio}
|
surankco | 2 | {bio}
|
sweed | 2 | {bio}
|
+ tnseq-transit | 2 | {bio,covid-19}
|
velvetoptimiser | 2 | {bio}
|
yaha | 2 | {bio}
|
zalign | 2 | {cloud,bio}
|
@@ -176,6 +175,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
libhmsbeagle | 1 | {bio-dev}
|
libvistaio | 1 | {imaging-dev}
|
logol | 1 | {bio}
|
+ ngs-sdk | 1 | {bio-dev}
|
opensurgsim | 1 | {imaging-dev}
|
papyrus | 1 | {imaging-dev}
|
plasmidseeker | 1 | {bio}
|
@@ -249,8 +249,8 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev}
|
pilercr | 0 | {bio}
|
quicktree | 0 | {covid-19,bio-phylogeny,bio}
|
- relion | 0 | {bio-dev}
|
relion | 0 | {bio}
|
+ relion | 0 | {bio-dev}
|
sambamba | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
seq-gen | 0 | {bio}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa
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