Andreas Tille pushed to branch master at Debian Med / ncbi-blastplus
Commits:
6efa5d80 by Iain Lane at 2020-09-04T12:39:42+01:00
run-unit-test: Pass -blastdb_version 4 to fix tests on 32 bit
- - - - -
762364ce by Andreas Tille at 2020-09-12T10:12:47+00:00
Merge branch 'blastdbv4' into 'master'
run-unit-test: Pass -blastdb_version 4 to fix tests on 32 bit
See merge request med-team/ncbi-blastplus!1
- - - - -
1 changed file:
- debian/tests/run-unit-test
Changes:
=====================================
debian/tests/run-unit-test
=====================================
@@ -14,7 +14,7 @@ cd $AUTOPKGTEST_TMP
find . -name "*.gz" -exec gunzip \{\} \;
echo '---Creating Database--'
-/usr/bin/makeblastdb -in testdatabase.fa -parse_seqids -dbtype nucl -out testdb
+/usr/bin/makeblastdb -blastdb_version 4 -in testdatabase.fa -parse_seqids
-dbtype nucl -out testdb
echo '---Searching Database for Hits---'
/usr/bin/blastn -query test.fa -db testdb -task blastn -dust no -outfmt "7
qseqid sseqid evalue bitscore" -max_target_seqs 2
echo '---Search and Fetch An Entry From Database---'
View it on GitLab:
https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/e46881b79153db2f10891dbb81fef89844ba1ab8...762364cedeed8cbf9ed6acc5d42e479ddcf72b48
--
View it on GitLab:
https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/e46881b79153db2f10891dbb81fef89844ba1ab8...762364cedeed8cbf9ed6acc5d42e479ddcf72b48
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