Andreas Tille pushed to branch master at Debian Med / kaptive
Commits: 7505cc6b by Iain Lane at 2020-09-04T18:16:36+01:00 debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems Fixes autopkgtest failure, and possibly a runtime failure too - - - - - 2 changed files: - + debian/patches/blastdb_4 - + debian/patches/series Changes: ===================================== debian/patches/blastdb_4 ===================================== @@ -0,0 +1,14 @@ +Description: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems +Author: Iain Lane <[email protected]> + +--- kaptive-0.7.0.orig/kaptive.py ++++ kaptive-0.7.0/kaptive.py +@@ -1797,7 +1797,7 @@ def makeblastdb(fasta): + gunzip.stdout.close() + _, err = makeblastdb_process.communicate() + else: # plain text +- makeblastdb_command = ['makeblastdb', '-dbtype', 'nucl', '-in', fasta] ++ makeblastdb_command = ['makeblastdb', '-blastdb_version', '4', '-dbtype', 'nucl', '-in', fasta] + makeblastdb_process = subprocess.Popen(makeblastdb_command, stdout=subprocess.PIPE, + stderr=subprocess.PIPE) + _, err = makeblastdb_process.communicate() ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +blastdb_4 View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6 -- View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6 You're receiving this email because of your account on salsa.debian.org.
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