Andreas Tille pushed to branch master at Debian Med / gwama
Commits: c1cf1d9f by Andreas Tille at 2020-11-16T10:19:28+01:00 routine-update: Standards-Version: 4.5.0 - - - - - 33413b49 by Andreas Tille at 2020-11-16T10:19:28+01:00 routine-update: debhelper-compat 13 - - - - - d0961818 by Andreas Tille at 2020-11-16T10:19:30+01:00 routine-update: Add salsa-ci file - - - - - 739edc20 by Andreas Tille at 2020-11-16T10:19:30+01:00 routine-update: Rules-Requires-Root: no - - - - - 996015e2 by Andreas Tille at 2020-11-16T10:19:35+01:00 Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 69fadfcc by Andreas Tille at 2020-11-16T10:19:35+01:00 Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Changes-By: lintian-brush Fixes: lintian: uses-deprecated-adttmp See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html - - - - - da764a86 by Andreas Tille at 2020-11-16T10:20:44+01:00 routine-update: Ready to upload to unstable - - - - - 6 changed files: - debian/changelog - − debian/compat - debian/control - + debian/salsa-ci.yml - debian/tests/run-sample-analysis - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,16 @@ +gwama (2.2.2+dfsg-3) unstable; urgency=medium + + * Team upload. + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Remove obsolete fields Contact, Name from debian/upstream/metadata (already + present in machine-readable debian/copyright). + * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. + + -- Andreas Tille <[email protected]> Mon, 16 Nov 2020 10:19:35 +0100 + gwama (2.2.2+dfsg-2) unstable; urgency=medium * Add registry references. ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Dylan Aïssi <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11), +Build-Depends: debhelper-compat (= 13), zlib1g-dev -Standards-Version: 4.1.4 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/gwama Vcs-Git: https://salsa.debian.org/med-team/gwama.git Homepage: https://www.geenivaramu.ee/en/tools/gwama +Rules-Requires-Root: no Package: gwama Architecture: any ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/run-sample-analysis ===================================== @@ -5,11 +5,11 @@ # Last-Update: 2014-12-24 pkg=gwama -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi -cd $ADTTMP -cp -a /usr/share/doc/${pkg}/examples/samples/* $ADTTMP +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/${pkg}/examples/samples/* $AUTOPKGTEST_TMP # Fixed analysis GWAMA --filelist "gwama.in" --quantitative --output "test_fixed" --name_marker "SNP" --name_ea "EFFECT_ALLELE" --name_nea "NON_EFFECT_ALLELE" @@ -19,5 +19,5 @@ diff test_fixed.out fixed.out GWAMA --filelist "gwama.in" --quantitative --output "test_random" --random --name_marker "SNP" --name_ea "EFFECT_ALLELE" --name_nea "NON_EFFECT_ALLELE" diff test_random.out random.out -rm -f $ADTTMP/* +rm -f $AUTOPKGTEST_TMP/* ===================================== debian/upstream/metadata ===================================== @@ -1,5 +1,3 @@ -Contact: Reedik Mägi <reedik.magi at ut.ee> -Name: GWAMA Reference: - Author: Reedik Mägi and Andrew P. Morris Title: "GWAMA: software for genome-wide association meta-analysis" View it on GitLab: https://salsa.debian.org/med-team/gwama/-/compare/e7b7b35d3f0f3533134e6d16f852c9a05c718c37...da764a86b8810067fc33ed4153a3127d4ece4cf4 -- View it on GitLab: https://salsa.debian.org/med-team/gwama/-/compare/e7b7b35d3f0f3533134e6d16f852c9a05c718c37...da764a86b8810067fc33ed4153a3127d4ece4cf4 You're receiving this email because of your account on salsa.debian.org.
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