Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
b3999ed2 by Andreas Tille at 2021-01-25T13:42:19+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,33 +1,33 @@
-Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
+Last-Update: Mon, 25 Jan 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                            
               |                                 Tags                           
      
 
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    184 | {covid-19,imaging}                   
               | 
- orthanc                       |     97 | {practice,covid-19,imaging}          
               | 
+ dcmtk                         |    179 | {covid-19,imaging}                   
               | 
+ orthanc                       |     96 | {practice,covid-19,imaging}          
               | 
  orthanc-wsi                   |     53 | 
{laboratory,imaging,his,covid-19,practice,oncology} | 
  gdcm                          |     35 | {imaging-dev}                        
               | 
  dicom3tools                   |     29 | {imaging}                            
               | 
  amide                         |     28 | {imaging}                            
               | 
  htsjdk                        |     26 | {bio-dev}                            
               | 
- dicomscope                    |     25 | {imaging}                            
               | 
- dcm2niix                      |     21 | {imaging}                            
               | 
- gdcm                          |     19 | {imaging,covid-19}                   
               | 
+ dicomscope                    |     24 | {imaging}                            
               | 
+ dcm2niix                      |     22 | {imaging}                            
               | 
  nifticlib                     |     19 | {imaging}                            
               | 
- odin                          |     17 | {imaging,imaging-dev}                
               | 
- ngs-sdk                       |     15 | {bio-dev}                            
               | 
+ gdcm                          |     18 | {imaging,covid-19}                   
               | 
+ ngs-sdk                       |     16 | {bio-dev}                            
               | 
+ odin                          |     16 | {imaging,imaging-dev}                
               | 
  plastimatch                   |     15 | {imaging}                            
               | 
  dicomnifti                    |     14 | {imaging}                            
               | 
- gdcm                          |     14 | {imaging-dev}                        
               | 
  gnumed-server                 |     14 | {practice,covid-19}                  
               | 
- invesalius                    |     13 | {imaging}                            
               | 
+ gdcm                          |     13 | {imaging-dev}                        
               | 
  minc-tools                    |     13 | {imaging}                            
               | 
  insighttoolkit4               |     12 | {imaging-dev}                        
               | 
  pixelmed                      |     12 | {imaging}                            
               | 
+ invesalius                    |     11 | {imaging}                            
               | 
  king                          |     11 | {typesetting,imaging}                
               | 
- mia                           |     10 | {imaging}                            
               | 
  openslide                     |     10 | {imaging}                            
               | 
- vtk-dicom                     |     10 | {imaging}                            
               | 
+ mia                           |      9 | {imaging}                            
               | 
  nifti2dicom                   |      9 | {imaging}                            
               | 
+ vtk-dicom                     |      9 | {imaging}                            
               | 
  adun.app                      |      8 | {bio}                                
               | 
  biojava-live                  |      8 | {bio-dev}                            
               | 
  orthanc-webviewer             |      8 | {imaging}                            
               | 
@@ -103,7 +103,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  dicompyler                    |      3 | {oncology}                           
               | 
  elastix                       |      3 | {imaging}                            
               | 
  estscan                       |      3 | {bio}                                
               | 
- fastml                        |      3 | {bio}                                
               | 
  getdata                       |      3 | {bio}                                
               | 
  ipig                          |      3 | {bio}                                
               | 
  jmodeltest                    |      3 | {bio-phylogeny,bio}                  
               | 
@@ -122,6 +121,7 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  busco                         |      2 | {bio,covid-19}                       
               | 
  clonalframeml                 |      2 | {bio,covid-19}                       
               | 
  delly                         |      2 | {covid-19,bio}                       
               | 
+ fastml                        |      2 | {bio}                                
               | 
  fsm-lite                      |      2 | {bio}                                
               | 
  gatb-core                     |      2 | {bio}                                
               | 
  hinge                         |      2 | {bio}                                
               | 
@@ -164,7 +164,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  libseqlib                     |      1 | {bio-dev}                            
               | 
  libstatgen                    |      1 | {bio-dev}                            
               | 
  ncbi-vdb                      |      1 | {bio-dev}                            
               | 
- opencfu                       |      1 | {laboratory}                         
               | 
  opensurgsim                   |      1 | {imaging-dev}                        
               | 
  papyrus                       |      1 | {imaging-dev}                        
               | 
  pbseqlib                      |      1 | {bio-dev}                            
               | 
@@ -205,8 +204,10 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  mia                           |      0 | {imaging-dev}                        
               | 
  miaviewit                     |      0 | {imaging-dev}                        
               | 
  milib                         |      0 | {covid-19,bio-dev}                   
               | 
+ mssstest                      |      0 | {tools}                              
               | 
  nanosv                        |      0 | {bio,covid-19}                       
               | 
  nifticlib                     |      0 | {imaging-dev}                        
               | 
+ opencfu                       |      0 | {laboratory}                         
               | 
  openslide                     |      0 | {imaging-dev}                        
               | 
  orthanc-imagej                |      0 | {imaging}                            
               | 
  parallel-fastq-dump           |      0 | {covid-19}                           
               | 
@@ -217,8 +218,8 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  pique                         |      0 | {bio}                                
               | 
  pplacer                       |      0 | {covid-19,bio-phylogeny,bio}         
               | 
  python-bcbio-gff              |      0 | {bio-dev}                            
               | 
- python-seqcluster             |      0 | {bio}                                
               | 
  python-seqcluster             |      0 | {covid-19,bio-dev}                   
               | 
+ python-seqcluster             |      0 | {bio}                                
               | 
  q2-sample-classifier          |      0 | {bio-dev,bio}                        
               | 
  resfinder-db                  |      0 | {bio}                                
               | 
  sambamba                      |      0 | {bio}                                
               | 
@@ -239,7 +240,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000
  vtk-dicom                     |      0 | {imaging-dev}                        
               | 
  xdffileio                     |      0 | {imaging-dev}                        
               | 
  yanagiba                      |      0 | {covid-19,bio}                       
               | 
- mssstest                      |     -1 | {tools}                              
               | 
  orthanc-gdcm                  |     -1 | {imaging}                            
               | 
  orthanc-python                |     -1 | {covid-19}                           
               | 
  sight                         |     -1 | {imaging-dev}                        
               | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3999ed2c5c63957b2a408690d2bc43054044c9c

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3999ed2c5c63957b2a408690d2bc43054044c9c
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