Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c93d9c4f by Andreas Tille at 2021-02-07T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,48 +1,48 @@
-Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
+Last-Update: Sun, 07 Feb 2021 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19}
|
+ dcmtk | 183 | {imaging,covid-19}
|
orthanc | 96 | {practice,imaging,covid-19}
|
orthanc-wsi | 51 |
{laboratory,practice,his,oncology,covid-19,imaging} |
dicom3tools | 34 | {imaging}
|
+ amide | 30 | {imaging}
|
gdcm | 30 | {imaging-dev}
|
- amide | 29 | {imaging}
|
htsjdk | 26 | {bio-dev}
|
dicomscope | 24 | {imaging}
|
- gdcm | 23 | {imaging,covid-19}
|
- dcm2niix | 20 | {imaging}
|
+ gdcm | 22 | {imaging,covid-19}
|
+ dcm2niix | 21 | {imaging}
|
odin | 18 | {imaging,imaging-dev}
|
nifticlib | 17 | {imaging}
|
- plastimatch | 16 | {imaging}
|
dicomnifti | 15 | {imaging}
|
gnumed-server | 15 | {covid-19,practice}
|
+ plastimatch | 15 | {imaging}
|
minc-tools | 14 | {imaging}
|
pixelmed | 13 | {imaging}
|
- king | 12 | {imaging,typesetting}
|
gdcm | 11 | {imaging-dev}
|
+ king | 11 | {imaging,typesetting}
|
+ ngs-sdk | 11 | {bio-dev}
|
openslide | 11 | {imaging}
|
adun.app | 10 | {bio}
|
- ngs-sdk | 10 | {bio-dev}
|
insighttoolkit4 | 9 | {imaging-dev}
|
invesalius | 9 | {imaging}
|
jebl2 | 9 | {bio-dev}
|
+ nifti2dicom | 9 | {imaging}
|
vtk-dicom | 9 | {imaging}
|
biojava-live | 8 | {bio-dev}
|
ea-utils | 8 | {bio}
|
- librg-utils-perl | 8 | {bio}
|
mia | 8 | {imaging}
|
mipe | 8 | {bio,cloud}
|
multiqc | 8 | {covid-19,bio}
|
ngs-sdk | 8 | {bio-dev}
|
biomaj3-cli | 7 | {cloud}
|
- bio-tradis | 7 | {bio,bio-dev}
|
fastlink | 7 | {bio,cloud}
|
jellyfish1 | 7 | {bio}
|
lagan | 7 | {bio}
|
libncl | 7 | {bio}
|
+ librg-utils-perl | 7 | {bio}
|
mauve-aligner | 7 | {bio}
|
- nifti2dicom | 7 | {imaging}
|
+ melting | 7 | {bio,cloud}
|
obitools | 7 | {bio}
|
orthanc-webviewer | 7 | {imaging}
|
prime-phylo | 7 | {bio,cloud}
|
@@ -50,6 +50,7 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
runcircos-gui | 7 | {bio}
|
tracetuner | 7 | {bio}
|
beast-mcmc | 6 | {bio-phylogeny,bio}
|
+ bio-tradis | 6 | {bio,bio-dev}
|
bitseq | 6 | {bio}
|
ecopcr | 6 | {bio}
|
embassy-domainatrix | 6 | {bio,cloud}
|
@@ -57,7 +58,7 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
estscan | 6 | {bio}
|
ghmm | 6 | {bio}
|
lamarc | 6 | {bio}
|
- melting | 6 | {bio,cloud}
|
+ libsbml | 6 | {bio-dev}
|
perm | 6 | {cloud,bio}
|
phast | 6 | {bio}
|
saint | 6 | {bio}
|
@@ -72,7 +73,6 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
cufflinks | 5 | {cloud,bio}
|
libpal-java | 5 | {bio-dev}
|
librdp-taxonomy-tree-java | 5 | {bio-dev}
|
- libsbml | 5 | {bio-dev}
|
orthanc-dicomweb | 5 | {covid-19,imaging}
|
piler | 5 | {bio}
|
prottest | 5 | {bio,bio-phylogeny}
|
@@ -99,6 +99,7 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
libminc | 4 | {imaging-dev}
|
mhap | 4 | {bio,bio-ngs}
|
microbegps | 4 | {bio}
|
+ ngs-sdk | 4 | {bio-dev}
|
orthanc-mysql | 4 | {imaging}
|
orthanc-postgresql | 4 | {imaging}
|
paraclu | 4 | {bio,cloud}
|
@@ -114,7 +115,6 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
tvc | 4 | {bio}
|
yaha | 4 | {bio}
|
blasr | 3 | {bio,bio-ngs}
|
- blimps | 3 | {bio}
|
cat-bat | 3 | {covid-19,bio}
|
clonalframeml | 3 | {bio,covid-19}
|
delly | 3 | {bio,covid-19}
|
@@ -122,18 +122,17 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
getdata | 3 | {bio}
|
ipig | 3 | {bio}
|
logol | 3 | {bio}
|
- ngs-sdk | 3 | {bio-dev}
|
pbdagcon | 3 | {bio}
|
placnet | 3 | {bio}
|
plasmidseeker | 3 | {bio}
|
samblaster | 3 | {covid-19,bio}
|
sga | 3 | {bio}
|
- sift | 3 | {bio}
|
soapaligner | 3 | {bio}
|
spaced | 3 | {bio}
|
sprai | 3 | {bio}
|
zalign | 3 | {cloud,bio}
|
atropos | 2 | {bio}
|
+ blimps | 2 | {bio}
|
dextractor | 2 | {bio,covid-19}
|
emmax | 2 | {bio}
|
gatb-core | 2 | {bio}
|
@@ -142,8 +141,10 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
nifticlib | 2 | {imaging-dev}
|
openslide | 2 | {imaging-dev}
|
oscar | 2 | {data,tools,practice}
|
+ papyrus | 2 | {imaging-dev}
|
python-bcbio-gff | 2 | {bio-dev}
|
segemehl | 2 | {bio}
|
+ sift | 2 | {bio}
|
spaln | 2 | {bio,covid-19}
|
srf | 2 | {bio-dev}
|
tophat-recondition | 2 | {covid-19,bio}
|
@@ -178,7 +179,6 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
nanosv | 1 | {bio,covid-19}
|
ncbi-vdb | 1 | {bio-dev}
|
opensurgsim | 1 | {imaging-dev}
|
- papyrus | 1 | {imaging-dev}
|
pbseqlib | 1 | {bio-dev}
|
pigx-rnaseq | 1 | {bio,covid-19}
|
pilercr | 1 | {bio}
|
@@ -224,8 +224,8 @@ Last-Update: Sun, 07 Feb 2021 01:42:03 +0000
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
plasmidid | 0 | {bio,covid-19}
|
- python-seqcluster | 0 | {bio}
|
python-seqcluster | 0 | {bio-dev,covid-19}
|
+ python-seqcluster | 0 | {bio}
|
q2-sample-classifier | 0 | {bio,bio-dev}
|
resfinder-db | 0 | {bio}
|
samtools-legacy | 0 | {bio-dev}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c93d9c4f2551be2785c06f58bc1baa7b2a5e34bf
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c93d9c4f2551be2785c06f58bc1baa7b2a5e34bf
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