Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3099a10e by Andreas Tille at 2021-02-09T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,40 +1,40 @@
-Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
+Last-Update: Tue, 09 Feb 2021 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19}
|
- orthanc | 96 | {practice,imaging,covid-19}
|
+ dcmtk | 181 | {imaging,covid-19}
|
+ orthanc | 100 | {practice,imaging,covid-19}
|
orthanc-wsi | 51 |
{laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 35 | {imaging}
|
dicom3tools | 34 | {imaging}
|
- amide | 30 | {imaging}
|
- gdcm | 30 | {imaging-dev}
|
+ gdcm | 29 | {imaging-dev}
|
htsjdk | 26 | {bio-dev}
|
dicomscope | 24 | {imaging}
|
- gdcm | 22 | {imaging,covid-19}
|
dcm2niix | 21 | {imaging}
|
+ gdcm | 21 | {imaging,covid-19}
|
+ nifticlib | 18 | {imaging}
|
odin | 18 | {imaging,imaging-dev}
|
- nifticlib | 17 | {imaging}
|
- dicomnifti | 15 | {imaging}
|
+ dicomnifti | 16 | {imaging}
|
gnumed-server | 15 | {covid-19,practice}
|
- plastimatch | 15 | {imaging}
|
- minc-tools | 14 | {imaging}
|
- pixelmed | 13 | {imaging}
|
+ minc-tools | 15 | {imaging}
|
+ plastimatch | 14 | {imaging}
|
+ pixelmed | 12 | {imaging}
|
gdcm | 11 | {imaging-dev}
|
king | 11 | {imaging,typesetting}
|
- ngs-sdk | 11 | {bio-dev}
|
openslide | 11 | {imaging}
|
adun.app | 10 | {bio}
|
- insighttoolkit4 | 9 | {imaging-dev}
|
- invesalius | 9 | {imaging}
|
+ insighttoolkit4 | 10 | {imaging-dev}
|
+ invesalius | 10 | {imaging}
|
+ ngs-sdk | 10 | {bio-dev}
|
+ nifti2dicom | 10 | {imaging}
|
jebl2 | 9 | {bio-dev}
|
- nifti2dicom | 9 | {imaging}
|
- vtk-dicom | 9 | {imaging}
|
biojava-live | 8 | {bio-dev}
|
ea-utils | 8 | {bio}
|
mia | 8 | {imaging}
|
mipe | 8 | {bio,cloud}
|
- multiqc | 8 | {covid-19,bio}
|
ngs-sdk | 8 | {bio-dev}
|
+ orthanc-webviewer | 8 | {imaging}
|
+ vtk-dicom | 8 | {imaging}
|
biomaj3-cli | 7 | {cloud}
|
fastlink | 7 | {bio,cloud}
|
jellyfish1 | 7 | {bio}
|
@@ -43,11 +43,10 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
librg-utils-perl | 7 | {bio}
|
mauve-aligner | 7 | {bio}
|
melting | 7 | {bio,cloud}
|
+ multiqc | 7 | {covid-19,bio}
|
obitools | 7 | {bio}
|
- orthanc-webviewer | 7 | {imaging}
|
prime-phylo | 7 | {bio,cloud}
|
pymia | 7 | {imaging-dev}
|
- runcircos-gui | 7 | {bio}
|
tracetuner | 7 | {bio}
|
beast-mcmc | 6 | {bio-phylogeny,bio}
|
bio-tradis | 6 | {bio,bio-dev}
|
@@ -59,8 +58,10 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
ghmm | 6 | {bio}
|
lamarc | 6 | {bio}
|
libsbml | 6 | {bio-dev}
|
+ orthanc-dicomweb | 6 | {covid-19,imaging}
|
perm | 6 | {cloud,bio}
|
phast | 6 | {bio}
|
+ runcircos-gui | 6 | {bio}
|
saint | 6 | {bio}
|
spread-phy | 6 | {bio,bio-phylogeny}
|
staden | 6 | {bio}
|
@@ -71,9 +72,9 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
busco | 5 | {covid-19,bio}
|
clonalorigin | 5 | {bio}
|
cufflinks | 5 | {cloud,bio}
|
+ elastix | 5 | {imaging}
|
libpal-java | 5 | {bio-dev}
|
librdp-taxonomy-tree-java | 5 | {bio-dev}
|
- orthanc-dicomweb | 5 | {covid-19,imaging}
|
piler | 5 | {bio}
|
prottest | 5 | {bio,bio-phylogeny}
|
pscan-chip | 5 | {bio}
|
@@ -90,7 +91,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
bamkit | 4 | {covid-19,bio}
|
canu | 4 | {bio}
|
dicompyler | 4 | {oncology}
|
- elastix | 4 | {imaging}
|
embassy-domalign | 4 | {cloud,bio}
|
fastml | 4 | {bio}
|
hinge | 4 | {bio}
|
@@ -141,7 +141,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
nifticlib | 2 | {imaging-dev}
|
openslide | 2 | {imaging-dev}
|
oscar | 2 | {data,tools,practice}
|
- papyrus | 2 | {imaging-dev}
|
python-bcbio-gff | 2 | {bio-dev}
|
segemehl | 2 | {bio}
|
sift | 2 | {bio}
|
@@ -178,7 +177,9 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
libstatgen | 1 | {bio-dev}
|
nanosv | 1 | {bio,covid-19}
|
ncbi-vdb | 1 | {bio-dev}
|
+ opencfu | 1 | {laboratory}
|
opensurgsim | 1 | {imaging-dev}
|
+ papyrus | 1 | {imaging-dev}
|
pbseqlib | 1 | {bio-dev}
|
pigx-rnaseq | 1 | {bio,covid-19}
|
pilercr | 1 | {bio}
|
@@ -190,6 +191,7 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
skewer | 1 | {bio}
|
svim | 1 | {bio}
|
thesias | 1 | {bio,covid-19}
|
+ varna | 1 | {bio}
|
acedb | 0 | {cloud,bio}
|
biojava4-live | 0 | {bio-dev}
|
biosyntax | 0 | {bio}
|
@@ -218,14 +220,13 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
milib | 0 | {bio-dev,covid-19}
|
mssstest | 0 | {tools}
|
nifticlib | 0 | {imaging-dev}
|
- opencfu | 0 | {laboratory}
|
orthanc-imagej | 0 | {imaging}
|
parallel-fastq-dump | 0 | {covid-19}
|
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
plasmidid | 0 | {bio,covid-19}
|
- python-seqcluster | 0 | {bio-dev,covid-19}
|
python-seqcluster | 0 | {bio}
|
+ python-seqcluster | 0 | {bio-dev,covid-19}
|
q2-sample-classifier | 0 | {bio,bio-dev}
|
resfinder-db | 0 | {bio}
|
samtools-legacy | 0 | {bio-dev}
|
@@ -234,7 +235,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
simpleitk | 0 | {imaging-dev}
|
simrisc | 0 | {oncology}
|
smrtanalysis | 0 | {covid-19,bio}
|
- varna | 0 | {bio}
|
vienna-rna | 0 | {covid-19,bio}
|
vtk-dicom | 0 | {imaging-dev}
|
xdffileio | 0 | {imaging-dev}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3099a10e70e0017e8683a79ef3c65ae0801d7942
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3099a10e70e0017e8683a79ef3c65ae0801d7942
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