Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
12e60e42 by Andreas Tille at 2021-02-16T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,33 +1,34 @@
-Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
+Last-Update: Tue, 16 Feb 2021 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19}
|
- orthanc | 100 | {practice,imaging,covid-19}
|
- orthanc-wsi | 52 |
{laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 38 | {imaging}
|
- dicom3tools | 35 | {imaging}
|
- gdcm | 32 | {imaging-dev}
|
- dicomscope | 28 | {imaging}
|
- gdcm | 23 | {imaging,covid-19}
|
- dcm2niix | 21 | {imaging}
|
- htsjdk | 21 | {bio-dev}
|
- dicomnifti | 19 | {imaging}
|
- odin | 19 | {imaging,imaging-dev}
|
- nifticlib | 18 | {imaging}
|
- minc-tools | 15 | {imaging}
|
- plastimatch | 15 | {imaging}
|
+ dcmtk | 179 | {imaging,covid-19}
|
+ orthanc | 98 | {practice,imaging,covid-19}
|
+ orthanc-wsi | 51 |
{laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 39 | {imaging}
|
+ dicom3tools | 36 | {imaging}
|
+ gdcm | 36 | {imaging-dev}
|
+ dicomscope | 29 | {imaging}
|
+ gdcm | 24 | {imaging,covid-19}
|
+ dcm2niix | 22 | {imaging}
|
+ htsjdk | 22 | {bio-dev}
|
+ dicomnifti | 20 | {imaging}
|
+ odin | 20 | {imaging,imaging-dev}
|
+ nifticlib | 19 | {imaging}
|
+ minc-tools | 16 | {imaging}
|
+ plastimatch | 16 | {imaging}
|
+ invesalius | 15 | {imaging}
|
gnumed-server | 14 | {covid-19,practice}
|
- invesalius | 14 | {imaging}
|
- king | 13 | {imaging,typesetting}
|
+ king | 14 | {imaging,typesetting}
|
+ openslide | 13 | {imaging}
|
pixelmed | 13 | {imaging}
|
gdcm | 12 | {imaging-dev}
|
- openslide | 12 | {imaging}
|
+ adun.app | 11 | {bio}
|
ngs-sdk | 11 | {bio-dev}
|
nifti2dicom | 11 | {imaging}
|
- adun.app | 10 | {bio}
|
- vtk-dicom | 10 | {imaging}
|
- insighttoolkit4 | 9 | {imaging-dev}
|
+ vtk-dicom | 11 | {imaging}
|
+ insighttoolkit4 | 10 | {imaging-dev}
|
+ mia | 8 | {imaging}
|
multiqc | 8 | {covid-19,bio}
|
orthanc-webviewer | 8 | {imaging}
|
ea-utils | 7 | {bio}
|
@@ -35,12 +36,12 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
jebl2 | 7 | {bio-dev}
|
jellyfish1 | 7 | {bio}
|
melting | 7 | {bio,cloud}
|
- mia | 7 | {imaging}
|
ngs-sdk | 7 | {bio-dev}
|
biojava-live | 6 | {bio-dev}
|
biomaj3-cli | 6 | {cloud}
|
dicompyler | 6 | {oncology}
|
fastlink | 6 | {bio,cloud}
|
+ libminc | 6 | {imaging-dev}
|
librg-utils-perl | 6 | {bio}
|
mipe | 6 | {bio,cloud}
|
obitools | 6 | {bio}
|
@@ -54,11 +55,9 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
embassy-domsearch | 5 | {cloud,bio}
|
lagan | 5 | {bio}
|
lamarc | 5 | {bio}
|
- libminc | 5 | {imaging-dev}
|
libncl | 5 | {bio}
|
libsbml | 5 | {bio-dev}
|
mauve-aligner | 5 | {bio}
|
- phyutility | 5 | {bio,cloud}
|
pymia | 5 | {imaging-dev}
|
runcircos-gui | 5 | {bio}
|
saint | 5 | {bio}
|
@@ -83,6 +82,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
orthanc-postgresql | 4 | {imaging}
|
perm | 4 | {cloud,bio}
|
phast | 4 | {bio}
|
+ phyutility | 4 | {bio,cloud}
|
piler | 4 | {bio}
|
prottest | 4 | {bio,bio-phylogeny}
|
pscan-chip | 4 | {bio}
|
@@ -95,6 +95,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
suitename | 4 | {bio}
|
arden | 3 | {bio,cloud}
|
assemblytics | 3 | {bio}
|
+ atropos | 3 | {bio}
|
bamkit | 3 | {covid-19,bio}
|
cat-bat | 3 | {covid-19,bio}
|
clonalframeml | 3 | {bio,covid-19}
|
@@ -118,6 +119,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
rambo-k | 3 | {bio}
|
rdp-alignment | 3 | {bio}
|
rtax | 3 | {bio,cloud}
|
+ samblaster | 3 | {covid-19,bio}
|
seqsero | 3 | {bio}
|
sga | 3 | {bio}
|
soapaligner | 3 | {bio}
|
@@ -126,7 +128,6 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
stacks | 3 | {bio}
|
surankco | 3 | {bio}
|
yaha | 3 | {bio}
|
- atropos | 2 | {bio}
|
blasr | 2 | {bio,bio-ngs}
|
blimps | 2 | {bio}
|
dextractor | 2 | {bio,covid-19}
|
@@ -135,9 +136,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
libdivsufsort | 2 | {bio-dev}
|
metaphlan2 | 2 | {bio}
|
openslide | 2 | {imaging-dev}
|
- oscar | 2 | {data,tools,practice}
|
plasmidseeker | 2 | {bio}
|
- samblaster | 2 | {covid-19,bio}
|
+ sambamba | 2 | {bio}
|
segemehl | 2 | {bio}
|
sift | 2 | {bio}
|
spaln | 2 | {bio,covid-19}
|
@@ -159,13 +159,13 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
ncbi-vdb | 1 | {bio-dev}
|
opencfu | 1 | {laboratory}
|
opensurgsim | 1 | {imaging-dev}
|
+ oscar | 1 | {data,tools,practice}
|
papyrus | 1 | {imaging-dev}
|
pigx-rnaseq | 1 | {bio,covid-19}
|
pilercr | 1 | {bio}
|
pique | 1 | {bio}
|
pplacer | 1 | {covid-19,bio,bio-phylogeny}
|
python-bcbio-gff | 1 | {bio-dev}
|
- sambamba | 1 | {bio}
|
samtools-legacy | 1 | {bio-dev}
|
seq-gen | 1 | {bio}
|
skesa | 1 | {bio}
|
@@ -224,8 +224,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
plasmidid | 0 | {bio,covid-19}
|
- python-seqcluster | 0 | {bio}
|
python-seqcluster | 0 | {bio-dev,covid-19}
|
+ python-seqcluster | 0 | {bio}
|
q2-sample-classifier | 0 | {bio,bio-dev}
|
resfinder-db | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a
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