Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5cbf42da by Andreas Tille at 2021-02-18T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Thu, 18 Feb 2021 01:42:03 +0000
+Last-Update: Thu, 18 Feb 2021 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 180 | {imaging,covid-19}
|
- orthanc | 99 | {practice,imaging,covid-19}
|
- orthanc-wsi | 52 |
{laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 40 | {imaging}
|
- gdcm | 37 | {imaging-dev}
|
- dicom3tools | 36 | {imaging}
|
+ orthanc | 98 | {practice,imaging,covid-19}
|
+ orthanc-wsi | 50 |
{laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 41 | {imaging}
|
+ gdcm | 39 | {imaging-dev}
|
+ dicom3tools | 37 | {imaging}
|
dicomscope | 32 | {imaging}
|
gdcm | 24 | {imaging,covid-19}
|
- dcm2niix | 22 | {imaging}
|
- htsjdk | 22 | {bio-dev}
|
+ htsjdk | 24 | {bio-dev}
|
+ dcm2niix | 21 | {imaging}
|
dicomnifti | 20 | {imaging}
|
odin | 20 | {imaging,imaging-dev}
|
nifticlib | 19 | {imaging}
|
@@ -21,61 +21,57 @@ Last-Update: Thu, 18 Feb 2021 01:42:03 +0000
gnumed-server | 14 | {covid-19,practice}
|
openslide | 13 | {imaging}
|
pixelmed | 13 | {imaging}
|
- adun.app | 12 | {bio}
|
gdcm | 12 | {imaging-dev}
|
+ adun.app | 11 | {bio}
|
king | 11 | {imaging,typesetting}
|
+ ngs-sdk | 11 | {bio-dev}
|
vtk-dicom | 11 | {imaging}
|
insighttoolkit4 | 10 | {imaging-dev}
|
- ngs-sdk | 10 | {bio-dev}
|
nifti2dicom | 10 | {imaging}
|
- ea-utils | 8 | {bio}
|
- jebl2 | 8 | {bio-dev}
|
- jellyfish1 | 8 | {bio}
|
+ mia | 9 | {imaging}
|
+ orthanc-webviewer | 9 | {imaging}
|
melting | 8 | {bio,cloud}
|
- mia | 8 | {imaging}
|
multiqc | 8 | {covid-19,bio}
|
- orthanc-webviewer | 8 | {imaging}
|
biojava-live | 7 | {bio-dev}
|
+ ea-utils | 7 | {bio}
|
elastix | 7 | {imaging}
|
- fastlink | 7 | {bio,cloud}
|
- mipe | 7 | {bio,cloud}
|
+ jebl2 | 7 | {bio-dev}
|
+ jellyfish1 | 7 | {bio}
|
ngs-sdk | 7 | {bio-dev}
|
- spread-phy | 7 | {bio,bio-phylogeny}
|
treeview | 7 | {bio-phylogeny,bio}
|
- beast-mcmc | 6 | {bio-phylogeny,bio}
|
- biomaj3-cli | 6 | {cloud}
|
dicompyler | 6 | {oncology}
|
- embassy-domsearch | 6 | {cloud,bio}
|
+ fastlink | 6 | {bio,cloud}
|
lamarc | 6 | {bio}
|
libminc | 6 | {imaging-dev}
|
libncl | 6 | {bio}
|
mauve-aligner | 6 | {bio}
|
+ mipe | 6 | {bio,cloud}
|
obitools | 6 | {bio}
|
orthanc-dicomweb | 6 | {covid-19,imaging}
|
- prime-phylo | 6 | {bio,cloud}
|
runcircos-gui | 6 | {bio}
|
saint | 6 | {bio}
|
salmon | 6 | {covid-19,bio}
|
+ spread-phy | 6 | {bio,bio-phylogeny}
|
anfo | 5 | {cloud,bio}
|
bart-view | 5 | {imaging}
|
+ beast-mcmc | 5 | {bio-phylogeny,bio}
|
+ biomaj3-cli | 5 | {cloud}
|
bio-tradis | 5 | {bio,bio-dev}
|
- bitseq | 5 | {bio}
|
brig | 5 | {bio}
|
canu | 5 | {bio}
|
cufflinks | 5 | {cloud,bio}
|
ecopcr | 5 | {bio}
|
- embassy-domainatrix | 5 | {bio,cloud}
|
- fastml | 5 | {bio}
|
+ embassy-domsearch | 5 | {cloud,bio}
|
lagan | 5 | {bio}
|
libpal-java | 5 | {bio-dev}
|
librdp-taxonomy-tree-java | 5 | {bio-dev}
|
- librg-utils-perl | 5 | {bio}
|
libsbml | 5 | {bio-dev}
|
mhap | 5 | {bio,bio-ngs}
|
perm | 5 | {cloud,bio}
|
phast | 5 | {bio}
|
phyutility | 5 | {bio,cloud}
|
piler | 5 | {bio}
|
+ prime-phylo | 5 | {bio,cloud}
|
prottest | 5 | {bio,bio-phylogeny}
|
pscan-chip | 5 | {bio}
|
pymia | 5 | {imaging-dev}
|
@@ -85,24 +81,27 @@ Last-Update: Thu, 18 Feb 2021 01:42:03 +0000
sibsim4 | 5 | {cloud,bio}
|
soapsnp | 5 | {bio}
|
staden | 5 | {bio}
|
- suitename | 5 | {bio}
|
tracetuner | 5 | {bio}
|
arden | 4 | {bio,cloud}
|
assemblytics | 4 | {bio}
|
atropos | 4 | {bio}
|
bamkit | 4 | {covid-19,bio}
|
+ bitseq | 4 | {bio}
|
busco | 4 | {covid-19,bio}
|
clonalframeml | 4 | {bio,covid-19}
|
clonalorigin | 4 | {bio}
|
+ embassy-domainatrix | 4 | {bio,cloud}
|
embassy-domalign | 4 | {cloud,bio}
|
- estscan | 4 | {bio}
|
+ fastml | 4 | {bio}
|
fsm-lite | 4 | {bio}
|
getdata | 4 | {bio}
|
hinge | 4 | {bio}
|
ipig | 4 | {bio}
|
jmodeltest | 4 | {bio,bio-phylogeny}
|
libdivsufsort | 4 | {bio-dev}
|
+ librg-utils-perl | 4 | {bio}
|
microbegps | 4 | {bio}
|
+ ngs-sdk | 4 | {bio-dev}
|
orthanc-mysql | 4 | {imaging}
|
orthanc-postgresql | 4 | {imaging}
|
paraclu | 4 | {bio,cloud}
|
@@ -119,14 +118,14 @@ Last-Update: Thu, 18 Feb 2021 01:42:03 +0000
spaced | 4 | {bio}
|
sprai | 4 | {bio}
|
stacks | 4 | {bio}
|
+ suitename | 4 | {bio}
|
surankco | 4 | {bio}
|
yaha | 4 | {bio}
|
cat-bat | 3 | {covid-19,bio}
|
delly | 3 | {bio,covid-19}
|
+ estscan | 3 | {bio}
|
gatb-core | 3 | {bio}
|
- ghmm | 3 | {bio}
|
logol | 3 | {bio}
|
- ngs-sdk | 3 | {bio-dev}
|
nifticlib | 3 | {imaging-dev}
|
pbdagcon | 3 | {bio}
|
samblaster | 3 | {covid-19,bio}
|
@@ -137,6 +136,7 @@ Last-Update: Thu, 18 Feb 2021 01:42:03 +0000
blimps | 2 | {bio}
|
dextractor | 2 | {bio,covid-19}
|
emmax | 2 | {bio}
|
+ ghmm | 2 | {bio}
|
kmerresistance | 2 | {bio}
|
metaphlan2 | 2 | {bio}
|
nanosv | 2 | {bio,covid-19}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5cbf42dada136e13f353596b6b37940356ce58bd
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5cbf42dada136e13f353596b6b37940356ce58bd
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