Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
4804bf10 by Andreas Tille at 2021-04-23T13:42:22+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,32 +1,32 @@
-Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
+Last-Update: Fri, 23 Apr 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                            
               |                                 Tags                           
      
 
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    189 | {covid-19,imaging}                   
               | 
- orthanc                       |     96 | {covid-19,practice,imaging}          
               | 
+ dcmtk                         |    185 | {covid-19,imaging}                   
               | 
+ orthanc                       |     94 | {covid-19,practice,imaging}          
               | 
  orthanc-wsi                   |     49 | 
{laboratory,imaging,his,oncology,covid-19,practice} | 
- gdcm                          |     46 | {imaging-dev}                        
               | 
+ gdcm                          |     48 | {imaging-dev}                        
               | 
  openslide                     |     41 | {imaging}                            
               | 
- amide                         |     36 | {imaging}                            
               | 
+ amide                         |     35 | {imaging}                            
               | 
  dicom3tools                   |     29 | {imaging}                            
               | 
  nipype                        |     29 | {imaging,imaging-dev}                
               | 
+ dicomscope                    |     28 | {imaging}                            
               | 
  htsjdk                        |     27 | {bio-dev}                            
               | 
- dicomscope                    |     26 | {imaging}                            
               | 
  dcm2niix                      |     21 | {imaging}                            
               | 
  gdcm                          |     17 | {covid-19,imaging}                   
               | 
  gdcm                          |     15 | {imaging-dev}                        
               | 
  minc-tools                    |     14 | {imaging}                            
               | 
- odin                          |     14 | {imaging-dev,imaging}                
               | 
+ odin                          |     13 | {imaging-dev,imaging}                
               | 
  adun.app                      |     12 | {bio}                                
               | 
  dicomnifti                    |     12 | {imaging}                            
               | 
  gnumed-server                 |     12 | {practice,covid-19}                  
               | 
  invesalius                    |     12 | {imaging}                            
               | 
+ ngs-sdk                       |     12 | {bio-dev}                            
               | 
  orthanc-webviewer             |     12 | {imaging}                            
               | 
- ngs-sdk                       |     11 | {bio-dev}                            
               | 
+ pixelmed                      |     12 | {imaging}                            
               | 
  nifticlib                     |     11 | {imaging}                            
               | 
- pixelmed                      |     11 | {imaging}                            
               | 
  insighttoolkit4               |     10 | {imaging-dev}                        
               | 
- mia                           |     10 | {imaging}                            
               | 
+ mia                           |      9 | {imaging}                            
               | 
  nifti2dicom                   |      9 | {imaging}                            
               | 
  vtk-dicom                     |      9 | {imaging}                            
               | 
  nifti2dicom                   |      8 | {imaging}                            
               | 
@@ -37,13 +37,12 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  dicompyler                    |      6 | {oncology}                           
               | 
  lagan                         |      6 | {bio}                                
               | 
  melting                       |      6 | {cloud,bio}                          
               | 
- ngs-sdk                       |      6 | {bio-dev}                            
               | 
  salmid                        |      6 | {bio}                                
               | 
  biomaj3-cli                   |      5 | {cloud}                              
               | 
  jebl2                         |      5 | {bio-dev}                            
               | 
  nifticlib                     |      5 | {imaging-dev}                        
               | 
  obitools                      |      5 | {bio}                                
               | 
- openslide                     |      5 | {imaging-dev}                        
               | 
+ orthanc-dicomweb              |      5 | {covid-19,imaging}                   
               | 
  bamkit                        |      4 | {covid-19,bio}                       
               | 
  bart-view                     |      4 | {imaging}                            
               | 
  busco                         |      4 | {covid-19,bio}                       
               | 
@@ -52,10 +51,11 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  king                          |      4 | {imaging,typesetting}                
               | 
  libncl                        |      4 | {bio}                                
               | 
  librg-utils-perl              |      4 | {bio}                                
               | 
- orthanc-dicomweb              |      4 | {covid-19,imaging}                   
               | 
+ openslide                     |      4 | {imaging-dev}                        
               | 
  orthanc-mysql                 |      4 | {imaging}                            
               | 
  pymia                         |      4 | {imaging-dev}                        
               | 
  rambo-k                       |      4 | {bio}                                
               | 
+ salmon                        |      4 | {bio,covid-19}                       
               | 
  staden                        |      4 | {bio}                                
               | 
  beast-mcmc                    |      3 | {bio-phylogeny,bio}                  
               | 
  biojava-live                  |      3 | {bio-dev}                            
               | 
@@ -68,10 +68,9 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  getdata                       |      3 | {bio}                                
               | 
  jellyfish1                    |      3 | {bio}                                
               | 
  lamarc                        |      3 | {bio}                                
               | 
- libdivsufsort                 |      3 | {bio-dev}                            
               | 
  orthanc-postgresql            |      3 | {imaging}                            
               | 
+ oscar                         |      3 | {data,practice,tools}                
               | 
  phast                         |      3 | {bio}                                
               | 
- salmon                        |      3 | {bio,covid-19}                       
               | 
  spread-phy                    |      3 | {bio,bio-phylogeny}                  
               | 
  tracetuner                    |      3 | {bio}                                
               | 
  anfo                          |      2 | {bio,cloud}                          
               | 
@@ -80,18 +79,17 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  gatb-core                     |      2 | {bio}                                
               | 
  ghmm                          |      2 | {bio}                                
               | 
  libctapimkt                   |      2 | {practice}                           
               | 
+ libdivsufsort                 |      2 | {bio-dev}                            
               | 
  libpal-java                   |      2 | {bio-dev}                            
               | 
  libsbml                       |      2 | {bio-dev}                            
               | 
  microbegps                    |      2 | {bio}                                
               | 
  opencfu                       |      2 | {laboratory}                         
               | 
- oscar                         |      2 | {data,practice,tools}                
               | 
  papyrus                       |      2 | {imaging-dev}                        
               | 
  pbdagcon                      |      2 | {bio}                                
               | 
  perm                          |      2 | {bio,cloud}                          
               | 
  phyutility                    |      2 | {cloud,bio}                          
               | 
  piler                         |      2 | {bio}                                
               | 
  plasmidid                     |      2 | {covid-19,bio}                       
               | 
- python-wdlparse               |      2 | {bio-dev}                            
               | 
  rtax                          |      2 | {bio,cloud}                          
               | 
  saint                         |      2 | {bio}                                
               | 
  samtools-legacy               |      2 | {bio-dev}                            
               | 
@@ -131,6 +129,7 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  placnet                       |      1 | {bio}                                
               | 
  prime-phylo                   |      1 | {cloud,bio}                          
               | 
  proalign                      |      1 | {bio,bio-phylogeny}                  
               | 
+ python-wdlparse               |      1 | {bio-dev}                            
               | 
  qcumber                       |      1 | {bio}                                
               | 
  quorum                        |      1 | {bio}                                
               | 
  rdp-alignment                 |      1 | {bio}                                
               | 
@@ -240,5 +239,5 @@ Last-Update: Fri, 23 Apr 2021 01:42:04 +0000
  mssstest                      |     -1 | {tools}                              
               | 
  orthanc-python                |     -1 | {covid-19}                           
               | 
  sight                         |     -1 | {imaging-dev}                        
               | 
-(270 rows)
+(269 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4804bf104abb3551e8e399e5eae19b2ed9cf9e83

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4804bf104abb3551e8e399e5eae19b2ed9cf9e83
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