Andreas, >> What we'll certainly do - move the binaries besides spades.py into >> /usr/share/spades/bin subdir. > > I guess you mean /usr/lib/spades/bin (since architecture dependant > binaries belong to /usr/lib rather than /usr/share according to FHS Right.
> It would be really great if you could provide such a suite which could > be a simple script processing your test data youo are providing anyway > and add a simple comparison mechanism to verify the result. When I > worked on the 3.0.0 package (which unfortunately is not finished yet ... > exactly due to the reason that I stumbled upon some tests and wanted to > do more comparisons) I realised that some output files are containing > dates and time stamps and thus comparisons do not make any sense but > other files need to match. I guess it would be on one hand easy for you > to define a valid test result and it would also be quite helpful for > your users. I believe that you need to run 3 cases: 1. spades.py --test 2. spades.py --iontorrent --test 3. dipspades.py --test Probably you need only to look that it finishes w/o problems and the final contigs file contains a single contig. > In Debian we are maintaining libbam-dev (from samtools currently at > version 0.1.19-1). This looks like another package. I'm talking about https://github.com/pezmaster31/bamtools (actually, we're using IonTorrent fork which knows how to do multi-threaded processing). > So if you would give me permission I would bounce this mail to the list > and might do so in the future as well in case you might forget (you do > not necessarily need to be subscribed but please ask for beeing CCed > to receive direct answers to your mail). Sure! -- With best regards, Anton Korobeynikov Faculty of Mathematics and Mechanics, Saint Petersburg State University -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/CA+Ov9+=qCbj4sDxdGZB4OiYoQupaWx1=RchkdM1gcNLR=hx...@mail.gmail.com
