Hi Anton, just to let you know that we are working on this.
On Wed, Apr 02, 2014 at 02:51:32PM +0400, Anton Korobeynikov wrote: > >> 1. spades.py --test > >> 2. spades.py --iontorrent --test > >> 3. dipspades.py --test > >> > >> Probably you need only to look that it finishes w/o problems and the > >> final contigs file contains a single contig. > > > > Could you turn this result somehow into code that returns some true or > > false? > We will see what can be done here. Right now there will be non-zero > return code in case of any crash. But we'll also check the results. Thanks. > > Hmmm, could you please be more verbose about this. > Here it is: https://github.com/iontorrent/bamtools I noticed that some preparation for packaging was done in the past but stalled for unknown reason. I updated the packaging to the latest version but was running into some issues I need to sort out first. > > For sure we would > > like to package the most useful version. Any chance that the bamtools > > authors might adopt any relevant changes. What would you recommend to use > > for a Debian package? > Well, I do not know all the differences, in fact. We prefer to use > IonTorrent version because we know it's used in TorrentSuite and we > tend to play safe wrt (possible) incompatibilities :) Before I'll upload I'll do some investigation into this to check the difference. If it seems to be relevant - specifically to fit the needs for SPAdes without harming other compatibility - we might decide for this version as well. I would even try to contact both upstreams whether they might intent to merge their effort. Thanks for the hints Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
