>> 1. spades.py --test >> 2. spades.py --iontorrent --test >> 3. dipspades.py --test >> >> Probably you need only to look that it finishes w/o problems and the >> final contigs file contains a single contig. > > Could you turn this result somehow into code that returns some true or > false? We will see what can be done here. Right now there will be non-zero return code in case of any crash. But we'll also check the results.
> Hmmm, could you please be more verbose about this. Here it is: https://github.com/iontorrent/bamtools > For sure we would > like to package the most useful version. Any chance that the bamtools > authors might adopt any relevant changes. What would you recommend to use > for a Debian package? Well, I do not know all the differences, in fact. We prefer to use IonTorrent version because we know it's used in TorrentSuite and we tend to play safe wrt (possible) incompatibilities :) -- With best regards, Anton Korobeynikov Faculty of Mathematics and Mechanics, Saint Petersburg State University -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/CA+Ov9+=RB=440-e91sajcx_8-nuw8qx5ysc5jvkdxbuwmka...@mail.gmail.com
