I see that you use all the libraries but if i insert in example for the
fish:
1 library of fragments 625E1AAXX.1.1.fastq 625E1AAXX.1.2.fastq
1 jumping library 803DNABXX.1.1.fastq 803DNABXX.1.2.fastq
and 1 fosmid jumping library 62F6HAAXX.1.1.fastq 62F6HAAXX.1.2.fastq
Am I assembling the fish genome or this is wrong?
Thank you.
On Tue, May 29, 2012 at 10:17 PM, nikos ioannidis <niioa...@gmail.com>wrote:
> Hello,
>
>
> a question i have to make is from the assemblathon data, for example the
> parrot,
> what would be the minimum input of libraries in order to have a good
> assembly product,
> and what would be the maximum?
> if you could you give me an example or two i would appreciate it?
>
>
> Thank you,
> and sorry if the question is excessive.
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