Hello,
If you question is about using a subset of the data for assembling the
Assemblathon fish genome,
then my opinion is that using only the 3 libraries that you listed will
not provide enough
k-mer coverage for a de novo assembly.
Sébastien
nikos ioannidis a écrit :
I see that you use all the libraries but if i insert in example for
the fish:
1 library of fragments625E1AAXX.1.1.fastq 625E1AAXX.1.2.fastq
1 jumping library 803DNABXX.1.1.fastq 803DNABXX.1.2.fastq
and 1 fosmid jumping library 62F6HAAXX.1.1.fastq 62F6HAAXX.1.2.fastq
Am I assembling the fish genome or this is wrong?
Thank you.
On Tue, May 29, 2012 at 10:17 PM, nikos ioannidis <niioa...@gmail.com
<mailto:niioa...@gmail.com>> wrote:
Hello,
a question i have to make is from the assemblathon data, for
example the parrot,
what would be the minimum input of libraries in order to have a
good assembly product,
and what would be the maximum?
if you could you give me an example or two i would appreciate it?
Thank you,
and sorry if the question is excessive.
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