Hello, I think there might be some problem with indels because read threading in Ray accommodate only for a few of them.
But for error-corrected reads, I suppose indels are less abundant. Louis Letourneau a écrit : > I'm wondering what are your thoughts on running Ray on error corrected > pacbio reads? > > I know an overlap based assembler works well (Mira, Celera), but do you > think Ray could work just as well? > I already ran celera with good results, but it took awhile. > > I'll try it out anyways, but I just wanted your impression. > > Louis > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > Denovoassembler-users mailing list > Denovoassembler-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
